Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0073 ATGCAATTAGAATTCTTGTATAGTTTGTGCATGAATTGTACTTATATGTATCATTGGATTTCTTTGTTAAATATGGATGCAACGAACTGCCATGGAAGCAACAAGGTGGAGAGTTTCTGCGTGAGTGATCCGCTGAACTGGGGAATGGCTGCGGAGACGTTGAAGGGAAGCCATTTGGATGAAGTGAAGCGCATGGTGGCGGAGTACCGGAAGCCGGTTGTTCGGCTCGGTGGTGAGACGCTTACCATATCGCAGGTGGCGGCTATCGCCGGGCGGGAGGGGGATGTGAGTGTGGAGTTGTCGGAGACGGCGAGAGCGGGCGTGAACGCGAGCAGCGAGTGGGTGATGGAGAGCATGAGCAAAGGCACCGACAGCTATGGTGTCACCACTGGGTTTGGTGCTACTTCACATAGGAGAACCAAACAAGGTGGTGCCCTTCAGAAGGAGCTCATCAGGTTCTTGAATGCTGGGATATTTGGGAACGGAAGAGAGTCATGCCACACACTGCCTCACTCAACAACAAGAGCCGCCATGCTCGTGAGGATCAACACCCTCCTCCAAGGCTACTCCGGCATCAGATTTGAGATTCTGGAAGCAATCACCAAGCTCCTCAATCACAACATCACTCCATGCTTGCCTCTGCGTGGCACCGTCACTGCCTCCGGAGACCTGGTTCCTCTCTCCTACATCGCTGGTCTTCTCACCGGCAGGCCTAATTCCAAAGCTGTTGGACCTTCCGGTGAAGTTGTCAATGCCGAAGAGGCCTTTAAAATGGCTGGGATCGAGTCGGGATTTTTTGAGTTGCAGCCTAAGGAAGGCCTGGCTCTTGTTAATGGCACCGCAGTTGGCTCTGGCTTGGCCTCTATGGTGCTTTTTGAGACCAATGTGCTGGCAGTTTTGTCTGAAGTTTTATCGGCTGTTTTTGCTGAAGTGATGCAGGGGAAGCCCGAATTCACTGACCACTTGACTCACAAATTGAAGCACCACCCTGGCCAAATCGAGGCTGCAGCCATTATGGAGCACATTCTAGATGGAAGCTCTTATGTGAAAGAAGCTAAGAAGCTACATGAGATGGATCCTCTGCAGAAGCCGAAGCAAGATCGATATGCTCTCAGGACTTCACCTCAATGGCTTGGCCCACATATTGAAGTCATCCGAGCATCAACTAAATCCATCGAACGGGAGATCAACTCTGTGAATGATAACCCCTTGATCGATGTTTCCAGGAACAAGGCTCTACATGGTGGCAACTTCCAGGGGACCCCAATTGGAGTCTCCATGGACAACACCCGCTTGGCCATTGCAGCCATTGGGAAGCTTATGTTTGCCCAGTTCTCAGAGCTTGTCAATGACTTCTACAACAATGGACTGCCATCAAATCTCTCTGGAAGCCGAAACCCGAGTCTGGACTATGGTTTCAAGGGAGCAGAAATTGCCATGGCTTCCTACTGTTCAGAGCTCCAGTTCTTGGCCAATCCTGTCACCAACCATGTCGAAAGTGCTGAGCAACACAACCAAGATGTGAACTCCTTGGGCTTAATCTCCTCCCGGAAAACAGCTGAAGCGGTGGATATCTTGAAGCTCATGTCTACCACATACCTAGTGGCACTCTGCCAGGCCATTGATTTGAGGCATTTGGAGGAGAATTTGAAGAGCACGGTGAAGAAGACTGTAAGCCACGTAGCTAAGAAAACTCTAACCACTGGAGCCAATGGAGAACTCCACCCATCGAGATTCTGCGAGAAGGACTTGCTAAAAGTGGTGGATAGGGAACATGTATTTGCCTACATCGATGACCCCTGCAGCGCCACATATCCACTGATGCAGAAGGTAAGGCAAGTTCTTGTGGAACATGCGCTGAACAATGGCGAAAATGAGAAGAATGGCAGCACCTCAATCTTCCAAAAAATAGTGGCATTCGAGGAGGAGTTGAAGGCCGTTTTGCCCAAAGAGGTTGAGAGCGCAAGAGGTGGGGTGGAGAGTGGAAACCCATCAATTCCGAACCGAATCAAGGAGTGCAGGTCATACCCATTGTACAAGTTTGTGAGGGAGGAGCTGGGAACAGGGCTGCTGACTGGTGAAAAGGTGAGGTCACCAGGGGAGGATTTTGACAAGGTGTTTACTGCAATGTGTGAGGGGAAGATCATCGACCCTCTTCTGGATTGTCTCAGTGCTTGGAACGGTGCTCCTCTCCCAATCTGCTAG 2205 0.5052 MQLEFLYSLCMNCTYMYHWISLLNMDATNCHGSNKVESFCVSDPLNWGMAAETLKGSHLDEVKRMVAEYRKPVVRLGGETLTISQVAAIAGREGDVSVELSETARAGVNASSEWVMESMSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGRESCHTLPHSTTRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTVTASGDLVPLSYIAGLLTGRPNSKAVGPSGEVVNAEEAFKMAGIESGFFELQPKEGLALVNGTAVGSGLASMVLFETNVLAVLSEVLSAVFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKEAKKLHEMDPLQKPKQDRYALRTSPQWLGPHIEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGSRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVESAEQHNQDVNSLGLISSRKTAEAVDILKLMSTTYLVALCQAIDLRHLEENLKSTVKKTVSHVAKKTLTTGANGELHPSRFCEKDLLKVVDREHVFAYIDDPCSATYPLMQKVRQVLVEHALNNGENEKNGSTSIFQKIVAFEEELKAVLPKEVESARGGVESGNPSIPNRIKECRSYPLYKFVREELGTGLLTGEKVRSPGEDFDKVFTAMCEGKIIDPLLDCLSAWNGAPLPIC* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0073 734 CDD PAL-HAL 79 544 IPR001106 -
Vvi16g0073 734 FunFam Phenylalanine ammonia-lyase 34 280 - -
Vvi16g0073 734 PANTHER HISTIDINE AMMONIA-LYASE 35 734 IPR001106 -
Vvi16g0073 734 FunFam Phenylalanine ammonia-lyase 281 595 - -
Vvi16g0073 734 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 216 232 IPR022313 GO:0016841
Vvi16g0073 734 FunFam Phenylalanine ammonia-lyase 547 668 - -
Vvi16g0073 734 Gene3D Fumarase/aspartase (Central domain) 281 729 - -
Vvi16g0073 734 Gene3D - 35 280 IPR024083 -
Vvi16g0073 734 Pfam Aromatic amino acid lyase 81 556 IPR001106 -
Vvi16g0073 734 SUPERFAMILY L-aspartase-like 43 734 IPR008948 GO:0003824
Vvi16g0073 734 Gene3D - 547 668 IPR023144 -
Vvi16g0073 734 NCBIfam phenylalanine ammonia-lyase 43 723 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0073 Vvi-Chr16 706775 712455 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0073 25 734 Monolignol Biosynthesis Gene Families AT2G37040 83.989 0.0 1256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0073 K10775 - vvi:100854997 1400.19