Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0068 ATGGATGCAACGAACTGCCATGGAAGCAACAAGGTGGAGAGTTTCTGCGTGAGTGATCCGCTGAACTGGGGAATGGCTGCGGAGACGTTGAAGGGAAGCCATTTGGATGAAGTGAAGCGCATGGTGGCGGAGTACCGGAAGCCGGTTGTTCGGCTCGGTGGTGAGACGCTTACCATATCGCAGGTGGCGGCTATCGCCGGGCGGGAGGGGGATGTGGGTGTGGAGTTGTCGGAGACGGCGAGAGCGGGCGTGAACGCGAGCAGTGAGTGGGTGATGGAGAGCATGAGCAAAGGCACCGACAGCTATGGTGTCACCACTGGGTTTGGTGCCACTTCACATAGGAGAACCAAACAAGGTGGTGCCCTTCAGAAGGAGCTCATCAGGTTCTTGAATGCTGGGATATTTGGGAACGGAAGAGAGTCATGCCACACACTGCCTCACTCAGCAACAAGAGCCGCCATGCTCGTGAGGATCAACACCCTCCTCCAAGGCTACTCCGGCATCAGATTTGAGATTCTGGAAGCAATCACCAAGCTCCTCAATCACAACATCACTCCATGCTTGCCTCTGCGTGGCACCGTCACTGCCTCCGGAGACCTGGTTCCTCTCTCCTACATCGCTGGTCTTCTCACCGGCAGGCCTAATTCCAAAGCTGTTGGACCTTCCGGTGAAGTTGTCAATGCCGAAGAGGCCTTTAAAATGGCTGGGATCGAGTCGGGATTTTTTGAGTTGCAGCCTAAGGAAGGCCTGGCTCTTGTTAATGGCACTGCAGTTGGCTCTGGCTTGGCCTCTATGGTGCTTTTTGAGACCAATGTGCTGGCAGTTTTGTCTGAAGTTTTATCGGCTATTTTTGCTGAAGTGATGCAGGGGAAGCCCGAATTCACTGACCACTTGACTCACAAATTGAAGCACCACCCTGGCCAAATCGAGGCTGCAGCCATTATGGAGCACATTCTAGATGGAAGCTCTTATGTGAAAGAAGCTAAGAAGCTACATGAGATGGATCCTCTGCAGAAGCCGAAGCAAGATCGATATGCTCTCAGGACTTCACCTCAATGGCTTGGCCCACAGATTGAAGTCATCCGAGCATCAACTAAATCCATCGAACGGGAGATCAACTCTGTGAATGATAACCCCTTGATCGATGTTTCCAGGAACAAGGCTCTACATGGTGGCAACTTCCAGGGGACCCCAATTGGAGTCTCCATGGACAACACCCGCTTGGCCATTGCAGCCATTGGGAAGCTTATGTTTGCCCAGTTCTCAGAGCTTGTCAATGACTTCTACAACAATGGACTGCCATCAAATCTCGCTGGAAGCCGAAACCCCAGTCTGGACTATGGTTTCAAGGGAGCAGAAATTGCCATGGCTTCCTACTGTTCAGAGCTCCAGTTCTTGGCCAATCCTGTCACCAACCATGTCGAAAGTGCTGAGCAACACAACCAAGATGTGAACTCCTTGGGCTTAATCTCCTCCCGGAAAACAGCTGAAGCGGTGGATATCTTGAAGCTCATGTCTACCACATACCTAGTGGCACTCTGCCAGGCCATTGATTTGAGGCATTTGGAGGAGAATTTGAAGAGCACGGTGAAGAAGACTGTCAGCCACGTAGCTAAGAAAACTCTAACCATTGGAGCCAATGGAGAACTCCACCCATCGAGATTCTGCGAGAAGGACTTGCTAAAAGTGGTGGATAGGGAACATGTATTTGCCTACATCGATGACCCCTGCAGCGCCACATATCCACTGATGCAGAAGGTAAGGCAAGTTCTGGTGGAACATGCGCTGAACAATGGCGAAAGTGAGAAGAATGGCAGCACCTCAATCTTCCAAAAAATAGGGGCATTCGAGGAGGAGTTGAAGGCCGTTTTGCCCAAAGAGGTTGAGAGCGCAAGAGATGGGGTGGAGAGTGGAAACCCATCAATTCCGAACCGAATCAAGGAGTGCAGGTCATACCCATTGTACAAGTTTGTGAGGGAGGAGCTGGGAACAGGGCTGCTGACTGGTGAAAAGGTGAGGTCACCAGGGGAGGATTTTGACAAGGTGTTTACTGCAATGTGTGAGGGGAAGATCATCGACCCTCTTCTGGATTGTCTCAGTGCTTGGAACGGTGCTCCTCTCCCAATCTGCTAG 2133 0.5157 MDATNCHGSNKVESFCVSDPLNWGMAAETLKGSHLDEVKRMVAEYRKPVVRLGGETLTISQVAAIAGREGDVGVELSETARAGVNASSEWVMESMSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGRESCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTVTASGDLVPLSYIAGLLTGRPNSKAVGPSGEVVNAEEAFKMAGIESGFFELQPKEGLALVNGTAVGSGLASMVLFETNVLAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKEAKKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLAGSRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVESAEQHNQDVNSLGLISSRKTAEAVDILKLMSTTYLVALCQAIDLRHLEENLKSTVKKTVSHVAKKTLTIGANGELHPSRFCEKDLLKVVDREHVFAYIDDPCSATYPLMQKVRQVLVEHALNNGESEKNGSTSIFQKIGAFEEELKAVLPKEVESARDGVESGNPSIPNRIKECRSYPLYKFVREELGTGLLTGEKVRSPGEDFDKVFTAMCEGKIIDPLLDCLSAWNGAPLPIC* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0068 710 Pfam Aromatic amino acid lyase 57 532 IPR001106 -
Vvi16g0068 710 CDD PAL-HAL 55 520 IPR001106 -
Vvi16g0068 710 SUPERFAMILY L-aspartase-like 19 710 IPR008948 GO:0003824
Vvi16g0068 710 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 192 208 IPR022313 GO:0016841
Vvi16g0068 710 Gene3D - 523 644 IPR023144 -
Vvi16g0068 710 PANTHER HISTIDINE AMMONIA-LYASE 12 710 IPR001106 -
Vvi16g0068 710 Gene3D Fumarase/aspartase (Central domain) 257 705 - -
Vvi16g0068 710 Gene3D - 11 256 IPR024083 -
Vvi16g0068 710 FunFam Phenylalanine ammonia-lyase 523 644 - -
Vvi16g0068 710 FunFam Phenylalanine ammonia-lyase 10 256 - -
Vvi16g0068 710 FunFam Phenylalanine ammonia-lyase 257 568 - -
Vvi16g0068 710 NCBIfam phenylalanine ammonia-lyase 19 699 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0068 Vvi-Chr16 650009 652471 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0068 1 710 Monolignol Biosynthesis Gene Families AT2G37040 84.270 0.0 1259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0068 K10775 - vvi:100245997 1407.12