Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0064 ATGAAGCCACTTTGCCATCCCGCCCACCTACCATTGACCTGTGGCATTTCAAAGACTCCTAGGCTCAAGGCACTCTATATAAGGAAAAGCCTCTGTCACCGTACTTCTCAGGAAACTCAGAATTTCAGAGCCCAACTTTCAGATTTCCTCCAGTTCCTCTCTCCCTCTCTCTCTCTTTCCTTCTTCGTTGTCGTGAAAAACCAGCTTTTTGCAGTTGTTTCTTTGTGGGGATTCGAAGACATGGAAGCAATGAACTGCCACGGAAGCAAAAAGGTGGAGAGTTTCGTCGTGAGTGATCCGCTGAACTGGGGAGTGGCAGCGGAGGCGTTGAAGGGGAGCCATTTGGATGAAGTAAAGCGCATGGTGGCAGAGTACCGGAAGCCGGTGGTTCGGCTTGGTGGTGAAACGCTTACGATATCGCAGGTGGCGGCTATCGCGGGGCGGGAGGAGGATGTGAGTGTGGAGTTGTCGGAGACGGCGAGAGCGGGCGTGAACGCGAGCAGTGAGTGGGTGATGGAGAGCATGAGCAAGGGCACCGATAGCTATGGTGTCACCACTGGGTTTGGTGCCACTTCACATAGGAGAACCAAACAAGGTGGTGCCCTTCAGAAGGAGCTCATCAGGTTCTTGAATGCTGGGATATTTGGGAACGGAAGAGAGTCATGCCACACACTGCCTCACTCAGCAACAAGAGCCGCCATGCTCGTGAGGATCAACACCCTCCTCCAAGGCTACTCCGGCATCAGATTTGAGATTCTGGAAGCAATCACCAAGCTCCTCAATCACAACATCACTCCATGCTTGCCTCTGCGTGGCACCGTCACTGCCTCCGGAGACCTGGTTCCTCTCTCCTACATCGCTGGTCTTCTCATTGGCAGGCCTAATTCCAAAGCTGTCGGACCTTCCGGTGATGTTGTCAATGCCGAAGAGGCCTTTAAAATGGCTGGGATCGAGTCGGGATTTTTTGAGTTGCAGCCTAAGGAAGGCCTGGCTCTTGTTAATGGCACTGCAGTTGGCTCTGGCTTGGCCTCTATGGTGCTTTTTGAGACCAATGTGCTGGCAGTTTTGTCTGAAGTTTTATCGGCTGTTTTTGCTGAAGTGATGCAGGGGAAGCCCGAATTCACTGACCACTTGACTCACAAATTGAAGCACCACCCTGGCCAAATCGAGGCTGCAGCCATTATGGAGCACATTCTAGATGGAAGCTCTTATGTGAAAGAAGCTAAGAAGCTACATGAGATGGATCCTCTGCAGAAGCCGAAGCAAGATCGATATGCTCTCAGGACTTCACCTCAATGGCTTGGCCCACACATTGAAGTCATCCGAGCATCAACTAAATCCATCGAACGGGAGATCAACTCTGTGAATGATAACCCCTTGATCGATGTTTCCAGGAACAAGGCTCTACATGGTGGCAACTTCCAGGGGACCCCAATTGGAGTCTCCATGGACAACACTCGCTTGGCCATTGCAGCCATTGGGAAGCTTATGTTTGCCCAGTTCTCAGAGCTTGTCAATGACTTCTACAACAATGGACTGCCATCAAATCTCTCTGGAAGCCGGAACCCGAGTCTGGATTATGGTTTCAAGGGAGCAGAAATTGCCATGGCTTCCTACTGTTCAGAGCTCCAGTTCTTGGCCAATCCTGTTACCAACCATGTCCAAAGCGCTGAGCAACACAACCAAGATGTGAACTCCTTGGGCTTAATCTCCTCCAGGAAAACAGCTGAAGCGGTGGATATCTTGAAGCTCATGTCTACCACATACCTAGTGGCACTCTGCCAGGCCATTGATTTGAGGCATTTGGAGGAGAATTTGAAGAGCACTGTGAAGAAGACTGTAAGCCACGTAGCTAAGAAGACTCTAACCACTGGAGCCAATGGAGGACTCCATCCATCGAGATTCTGCGAGAAGGACTTGCTAAAAGTGGTGGATAGGGAACATGTATTTGCCTACATCGATGACCCCTGCAGCGCCACATATCCACTGATGCAGAAGTTAAGGCAAGTTCTGGTGGAACATGCGTTGAGCAATGGCGAAAATGAGAAGAATGGAAGTACCTCAATCTTCCAAAAAATAGTGGCATTCGAGGAGGAGTTGAAGGCCGTTTTACCCAAAGAGGTTGAGAGCGCAAGAGGTGGGGTGGAGAGTGGAAACCCATCAATTCCGAACCGAATCAAGGAGTGCAGGTCATACCCATTGTACAAGTTTGTGAGGGAGGAGCTGGGAACAGGGCTGCTGACTGGTGAAAAGGTGAGGTCACCAGGGGAGGAGTTTGACAAGGTGTTTACTGCAATGTGTGAGGGGAAGATCATCGACCCTCTTCTGGATTGTCTCAGTGCTTGGAACGGTGCACCTCTCCCAATCTGCTAG 2373 0.5065 MKPLCHPAHLPLTCGISKTPRLKALYIRKSLCHRTSQETQNFRAQLSDFLQFLSPSLSLSFFVVVKNQLFAVVSLWGFEDMEAMNCHGSKKVESFVVSDPLNWGVAAEALKGSHLDEVKRMVAEYRKPVVRLGGETLTISQVAAIAGREEDVSVELSETARAGVNASSEWVMESMSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGRESCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTVTASGDLVPLSYIAGLLIGRPNSKAVGPSGDVVNAEEAFKMAGIESGFFELQPKEGLALVNGTAVGSGLASMVLFETNVLAVLSEVLSAVFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKEAKKLHEMDPLQKPKQDRYALRTSPQWLGPHIEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGSRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSTTYLVALCQAIDLRHLEENLKSTVKKTVSHVAKKTLTTGANGGLHPSRFCEKDLLKVVDREHVFAYIDDPCSATYPLMQKLRQVLVEHALSNGENEKNGSTSIFQKIVAFEEELKAVLPKEVESARGGVESGNPSIPNRIKECRSYPLYKFVREELGTGLLTGEKVRSPGEEFDKVFTAMCEGKIIDPLLDCLSAWNGAPLPIC* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0064 790 CDD PAL-HAL 135 600 IPR001106 -
Vvi16g0064 790 Gene3D Fumarase/aspartase (Central domain) 337 785 - -
Vvi16g0064 790 PANTHER HISTIDINE AMMONIA-LYASE 91 790 IPR001106 -
Vvi16g0064 790 FunFam Phenylalanine ammonia-lyase 337 645 - -
Vvi16g0064 790 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 272 288 IPR022313 GO:0016841
Vvi16g0064 790 Gene3D - 603 724 IPR023144 -
Vvi16g0064 790 FunFam Phenylalanine ammonia-lyase 90 336 - -
Vvi16g0064 790 Gene3D - 91 336 IPR024083 -
Vvi16g0064 790 Pfam Aromatic amino acid lyase 137 612 IPR001106 -
Vvi16g0064 790 NCBIfam phenylalanine ammonia-lyase 99 779 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vvi16g0064 790 FunFam Phenylalanine ammonia-lyase 603 724 - -
Vvi16g0064 790 SUPERFAMILY L-aspartase-like 99 790 IPR008948 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0064 Vvi-Chr16 613592 616291 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0064 81 790 Monolignol Biosynthesis Gene Families AT2G37040 84.270 0.0 1259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0064 K10775 - vvi:100256293 1395.18