Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0054 ATGGCCAGTGGGGCGATGCAGGAAGAGCAAGTGAAGCTGTTGGGCATATGGTTTAGCCCATTTGTGAGAAGAATAGAGTGGGCTCTCAAGTTCAAAGGCATAGAATATGAGTATGTGGAAGAAGACTTGACCAACAAGAGCTCTCTTCTCCTCACCTCCAACCCAGTTCACCAGAAAGTCCCTGTGCTGCTTCATAACGGCAACCCCATTGTTGAATCACTTGTTATCATAGAGTATATTGATGAGAATTGGAAGCAAAACCCCATTTTGCCTCAAGACCCTCATGAGAGAGCCAAGGCTCGCTTTTGGGCAAACTTCATTGAACAAAAGATAACAGAAGCTACAAGAACAGCATTAGTTACTGAAGGAGAGCAACAAAAGAAGGTAGTGAAGGAACTAAAAGAAGCCATGGAAGTGCTTGAAGGAGAGGCTGCAGCCAAGCTCAATGACAAGACATTATTCTTTGGAGGCAAAAATGGTCTTGGGTATGTGGACATTGTGCTAGGTTGGATATGTAATTGGGTGGAAGTCATTGAAGAAGTTGGAGGGTTCAAGGTTTTGGACCCACAAAAGCAACCACACATTCACAAATGGATGGCCAACTTTGTGGAGGTGCCTCTCATCAAGCCAACCTTGCTGCCCAAGGAGAAGATGGTGGTGTGCTTTCAAATGGTTCGCCAAGCTCATTTAGGTTTGGATGCCAAGAAATGA 711 0.4501 MASGAMQEEQVKLLGIWFSPFVRRIEWALKFKGIEYEYVEEDLTNKSSLLLTSNPVHQKVPVLLHNGNPIVESLVIIEYIDENWKQNPILPQDPHERAKARFWANFIEQKITEATRTALVTEGEQQKKVVKELKEAMEVLEGEAAAKLNDKTLFFGGKNGLGYVDIVLGWICNWVEVIEEVGGFKVLDPQKQPHIHKWMANFVEVPLIKPTLLPKEKMVVCFQMVRQAHLGLDAKK* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0054 236 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 13 205 IPR045073 -
Vvi16g0054 236 Gene3D - 90 232 - -
Vvi16g0054 236 SUPERFAMILY GST C-terminal domain-like 82 227 IPR036282 -
Vvi16g0054 236 Pfam Glutathione S-transferase, N-terminal domain 10 82 IPR004045 -
Vvi16g0054 236 Pfam Glutathione S-transferase, C-terminal domain 118 204 IPR004046 -
Vvi16g0054 236 SFLD Glutathione Transferase (cytosolic) 6 229 IPR040079 -
Vvi16g0054 236 CDD GST_C_Tau 94 219 IPR045074 GO:0004364|GO:0006749
Vvi16g0054 236 SFLD Main.3: Omega- and Tau-like 6 229 IPR045073 -
Vvi16g0054 236 Coils Coil 123 150 - -
Vvi16g0054 236 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 9 88 IPR004045 -
Vvi16g0054 236 SUPERFAMILY Thioredoxin-like 10 110 IPR036249 -
Vvi16g0054 236 FunFam Tau class glutathione S-transferase 6 92 - -
Vvi16g0054 236 Gene3D Glutaredoxin 4 89 - -
Vvi16g0054 236 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 93 222 IPR010987 -
Vvi16g0054 236 FunFam Tau class glutathione S-transferase 90 231 - -
Vvi16g0054 236 CDD GST_N_Tau 11 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0054 Vvi-Chr16 541778 543620 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0054 7 217 Glutathione S-transferase Gene Family AT2G29420 47.867 2.00e-66 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0054 K00799 - vvi:100254521 468.003