Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0037 ATGCCTTCTGCGAAGAAGCTAAAGCAGAATATTGAGCAAAAGGGTGTTGGTGGAGCATTCAGCAAGTTGCTGAAGGAGTTGGGAAACCCAGTTGACTTTGAACTTCCAAGTTCATTTAATAAATGGAAGCCTACCTCCTACACCTTTATAAGGCGCAATATATATCTTACTAAGAAAATCAAAAGGCGCCTTGAGGATGATGGCATATTCTGTTCCTGTAGCTCTGGGTCAGGATCTTCTGGTGTGTGTGGGAGAGATTGCCTATGTGGGATGCTACAATCTAGCTGTTCCTCAGGCTGTAAATGTGGGACTTCATGTCTCAACAAACCATTCCAGAGCCGACCTGTGAAGAAGATGAAAATGGTGGAGACTGAGAAGTGTGGATCAGGGATAGTGGCAGATGAAGATATCAAGCAAGGAGAATTTGTGATAGAATATGTGGGAGAAGTTATTGATGATAAAACATGTGAGGACAGGCTTTGGAAAATGAAACACCTTGGAGAAACAAACTTTTACCTATGTGAGATCAATCGAGATATGGTGATTGATGCTACATACAAGGGAAACAAGTCAAGATATATAAATCATAGTTGTGATCCCAACACTGAAATGCAGAAATGGAGAATTGATGGTGAAACCAGAATTGGCATATTTGCAACCCGTGACATAAAAAGGGGGGAGCACCTGACCTATGATTATCAGTTTGTTCAATTTGGTGCGGATCAAGATTGCCACTGTGGTGCTGTAGGCTGTCGTAGAAAGCTTGGTGTTAAACCTAGCAAGCCTAAGTTGGCTTCCTCAGACGCTGCATTGAAACTAGTTGCATGCCAGGTGGCTATGTCCTCTTCCAAAATGAAAGCAATTCTATCAGGAAATAATGTATATCAAAATGGTGGTCTACATATAGGAAGTTCACGACTTACCCATGATCAACAAAGAATAGGATCCCGTAATTGCATCGGTGAAATTATTATGGTAACTCGTTCCATGGGCGAGAGGTCTTTTGGGATTATTAAACGGTTTGACAACAATTCCAAAAAACACCTGGTAAGGGAAGATTTCCTGTGTTCTGTAAGATTAGTTGACAATATGTTTATATTCATATAA 1107 0.4083 MPSAKKLKQNIEQKGVGGAFSKLLKELGNPVDFELPSSFNKWKPTSYTFIRRNIYLTKKIKRRLEDDGIFCSCSSGSGSSGVCGRDCLCGMLQSSCSSGCKCGTSCLNKPFQSRPVKKMKMVETEKCGSGIVADEDIKQGEFVIEYVGEVIDDKTCEDRLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCDPNTEMQKWRIDGETRIGIFATRDIKRGEHLTYDYQFVQFGADQDCHCGAVGCRRKLGVKPSKPKLASSDAALKLVACQVAMSSSKMKAILSGNNVYQNGGLHIGSSRLTHDQQRIGSRNCIGEIIMVTRSMGERSFGIIKRFDNNSKKHLVREDFLCSVRLVDNMFIFI* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0037 368 ProSiteProfiles SET domain profile. 109 234 IPR001214 GO:0005515
Vvi16g0037 368 ProSiteProfiles AWS domain profile. 66 115 IPR006560 GO:0005634|GO:0042054
Vvi16g0037 368 Gene3D SET domain 34 272 IPR046341 -
Vvi16g0037 368 CDD SET_ASHR3-like 118 256 - -
Vvi16g0037 368 ProSiteProfiles Post-SET domain profile. 240 256 IPR003616 -
Vvi16g0037 368 Pfam SET domain 128 233 IPR001214 GO:0005515
Vvi16g0037 368 SMART PostSET_3 240 256 IPR003616 -
Vvi16g0037 368 SMART shorttest3 66 116 IPR006560 GO:0005634|GO:0042054
Vvi16g0037 368 PANTHER SET DOMAIN PROTEINS 33 285 - -
Vvi16g0037 368 FunFam Histone-lysine N-methyltransferase 33 273 - -
Vvi16g0037 368 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 40 287 IPR025787 -
Vvi16g0037 368 SUPERFAMILY SET domain 29 246 IPR046341 -
Vvi16g0037 368 SMART set_7 117 240 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0037 Vvi-Chr16 371514 399565 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0037 96 252 C2H2 Transcription Factor Family AT2G23740 33.523 1.35e-20 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi16g0037 SET 6.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0037 - - vvi:100252753 707.983