LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi16g0031	ATGGATGATGATGGGGTGGGTGCTAGTAAGGATGCCCAACCTCAGCACTCTGATCAGGCAACCTCGTCGTCGTCGTCCTCCGCCGAATCGGAATCGAGATGGCGCCCAAGCAAGCTCGTGTTCGCTCCTTATTCGCCTTCCCTTGAAGCTGCTACCAAGTCTCAAGCTCTGCGAGTGGTTGTGAGAAGGCCTTTGGTGGCAAGGCTAACCAAGGACATAGTTGAAACATACCAGATATGTAATCCACAGTTCAAGTATTCAGAAGAATTGAATCCAAAGCGATTCTTGACCAGTCCATCGATTGGTGTTTTAAATGATGGCCATGATAATGTGAATTCGGATCTTATACTGGCTGTCAACTCAGTCTTGGTCAATTCAGAAACACAGAGAAGATACATCATCAAAGATATTCTTGGCCATGGGACATTTGGGCAGGTTGCTAAATGCTGGGTTACAGAAACTAACAGTTTCACTGCTGTTAAAATTATTAAAAATCAACCTGCATACTATCAACAAGCCCTGGTTGAAGTCTCTATTCTGACTACATTAAATAAGAAGTATGATCCCGAGGATAAGAATCACATTGTTCGTATCTATGATTACTTTGTTCATCAGCGTCATTTGTGCATTGCTTTTGAGTTGCTTGACACAAATCTGTATGAGCTTATCAAGATAAACCATTTTCGGGGGCTATCATTGAGCATTGTTCAGTTGTTTTCAAAACAGATATTGCGTGGATTGGCTTTGATGAAAGATGCTGGTATTATTCACTGTGATCTGAAGCCAGAAAATATTCTCCTATGCACGAGGGTGAAGCCAGCAGAAATCAAAATTATCGACTTTGGATCTGCCTGTATGGAAGATCGAACTGTTTACTCCTACATTCAGAGTCGATACTATAGGTCTCCTGAAGTTCTTCTCGGCTATCAGTATACTACGGCTATTGACATGTGGTCTTTTGGGTGTATAGTTGCTGAGTTGTTTCTAGGGTTGCCGCTATTTCCCGGAGCTTCAGAATTTGATCTTCTAAGGCGAATGATACAAATACTTGGGGGACAGCCCCCTGACTATGTACTAAAGGAGGCAAAAAACACTAGTAAATTCTTTAAGTGCATTGGGAGTTTCCATCATGTAGAGAATGGTGATGTTTCTATGGGTGGCAGAAGTGCTTATCTGGCCTTGTCAGAAGAAGATTACGAAGCTAGGGAGTTGAAAAAACCGTCAATTGGAAAAGAGTATTTCATTCATAAGAACCTTGAAGCAATTGTTACAAACTACCCTTACAGAAAGAACTTGGCTGAGGAAGATATTGTCAAAGAAAGTCGAGTTCGGTTGGCACTGATTGATTTCTTGAGGGGACTGGTTGAATTTGATCCTGCAAAGCGGTGGTCACCTTTTCAGGCTTCAAAACATCCTTTTGTGACAGGCGAACCTTTCACATGCCCTTACAGACCTCCTGCAGAGACTCCTCGTGTGCCTGTTGCTCAAAATGTTAAGGTGGATCATCACCCAGGTGGAGGCCATTGGTTTGCTGCTGGTCTCTCTCCTAACATTCCAGGCAGAAATAGAGCTACCCTGCATAACAGCCCACATTTTCAGGTTGTGCCATATGCACATGCCAGTAGTTATGGCAGTTTAGGAAGCCATGGTAGTTATAATGATGGTACTGGGCTTGGAAGCAGCTATGGAAGTTATGGAGACAATAGCAATATGTTTGCATATTATTCACCTGCTGGTCCGTCTGCAATGAACATCCATGCACAGGGTGGTGTCTCAATGCTTGGAACAAGCCCTGATGCGAGGCGGAGGATTATTCCATTCCCACATGGAAATGGACTTGGTGTAAGTCCATCTGCAGGAAATTTTGCACCATTGCCTCTTGGAACCAGTCCCTCACAATTTACTCCTCCGAACTCCTATAGCCAGGTTTCAACTGGTTCTCCTGGACACTATGGGCCGACTTCTCCAGCAAGAGGCAGTTGTCATGGATCACCTTTAGGGAAAATGGCTGCAGTTAGCCAGTTCAACAGAAGAAAAAGTTGGGGATATTCTGGAAGTTTGCAATCTCAAGAGAGTTCTTCATCTGCACATTGGCAGGGGCATTTTACTGATGGTACGAGCTCTAACCAATCTGAGGGAAACTCTCAAGCATTTGGTGGCTCCCCATTGCATCTGCAATCAAACTCTAATGCCACAAGCTGGAAGCAGCAGCGAGGTGGCAGTGGAATTGCTTTCCAGAACATTCCAAGTTCCTTTACACTTGGTTCCAATGTACAATTTGCACAAACTGCGGGTGTGGTTCATGAAAAACCGGAATCTAGCCTTTTGCTGCCTGATCCTGGAGATTGGGATCCCAACTATAGTGATGAACTTCTTTTGCAAGACGATGGTTCGGACATGGCCACCGAGTTTAGCAAAGGGATGCATCTTGGTCAAAATTTTGGTTCTGCAGAGCCATTAGTTGGAGTTGGAAGATTCGGCCATGCCTCAAGCACAAGCTCAAATACATCCAGGCCCATTCAACCATTTTCGCATGCAGAGGTGGGCAGCCCTCCTACCCATGATCCACATGCTGGATATGTGCGGCCCATGTCAAAGCCTTCACACTTCGTGCCTCATATATCACAAAATTCTCCTAGCCGTTTGGGGCAACAACCCATTCAGCGGTTAAATCATGGGAGATCAACGGCTGGTCGTGGTAGTGACTGGAGTCAAACTAAGCCCAGTCCTCCCAATTTTAGCTCTGGGGGTCCACGTTCTCCTGGGAATAGCTCGTTCAGCAATGGCATGTCATGGGGGCGTCGGGCCAATCATCCTGTCACCAACTTACCGCCAACATCCTATGGAAGAAAAGACTATGGAAGGATTGCGTAA	2874	0.452	MDDDGVGASKDAQPQHSDQATSSSSSSAESESRWRPSKLVFAPYSPSLEAATKSQALRVVVRRPLVARLTKDIVETYQICNPQFKYSEELNPKRFLTSPSIGVLNDGHDNVNSDLILAVNSVLVNSETQRRYIIKDILGHGTFGQVAKCWVTETNSFTAVKIIKNQPAYYQQALVEVSILTTLNKKYDPEDKNHIVRIYDYFVHQRHLCIAFELLDTNLYELIKINHFRGLSLSIVQLFSKQILRGLALMKDAGIIHCDLKPENILLCTRVKPAEIKIIDFGSACMEDRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLRRMIQILGGQPPDYVLKEAKNTSKFFKCIGSFHHVENGDVSMGGRSAYLALSEEDYEARELKKPSIGKEYFIHKNLEAIVTNYPYRKNLAEEDIVKESRVRLALIDFLRGLVEFDPAKRWSPFQASKHPFVTGEPFTCPYRPPAETPRVPVAQNVKVDHHPGGGHWFAAGLSPNIPGRNRATLHNSPHFQVVPYAHASSYGSLGSHGSYNDGTGLGSSYGSYGDNSNMFAYYSPAGPSAMNIHAQGGVSMLGTSPDARRRIIPFPHGNGLGVSPSAGNFAPLPLGTSPSQFTPPNSYSQVSTGSPGHYGPTSPARGSCHGSPLGKMAAVSQFNRRKSWGYSGSLQSQESSSSAHWQGHFTDGTSSNQSEGNSQAFGGSPLHLQSNSNATSWKQQRGGSGIAFQNIPSSFTLGSNVQFAQTAGVVHEKPESSLLLPDPGDWDPNYSDELLLQDDGSDMATEFSKGMHLGQNFGSAEPLVGVGRFGHASSTSSNTSRPIQPFSHAEVGSPPTHDPHAGYVRPMSKPSHFVPHISQNSPSRLGQQPIQRLNHGRSTAGRGSDWSQTKPSPPNFSSGGPRSPGNSSFSNGMSWGRRANHPVTNLPPTSYGRKDYGRIA*	958

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi16g0031	957	SMART	serkin_6	132	474	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi16g0031	957	SUPERFAMILY	Protein kinase-like (PK-like)	127	494	IPR011009	-
	Vvi16g0031	957	MobiDBLite	consensus disorder prediction	870	944	-	-
	Vvi16g0031	957	MobiDBLite	consensus disorder prediction	1	33	-	-
	Vvi16g0031	957	MobiDBLite	consensus disorder prediction	683	738	-	-
	Vvi16g0031	957	MobiDBLite	consensus disorder prediction	12	33	-	-
	Vvi16g0031	957	MobiDBLite	consensus disorder prediction	624	665	-	-
	Vvi16g0031	957	ProSiteProfiles	Protein kinase domain profile.	132	474	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi16g0031	957	CDD	PKc_YAK1	132	474	-	-
	Vvi16g0031	957	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	16	477	-	-
	Vvi16g0031	957	Gene3D	Phosphorylase Kinase; domain 1	97	211	-	-
	Vvi16g0031	957	MobiDBLite	consensus disorder prediction	827	843	-	-
	Vvi16g0031	957	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	255	267	IPR008271	GO:0004672\|GO:0006468
	Vvi16g0031	957	MobiDBLite	consensus disorder prediction	825	957	-	-
	Vvi16g0031	957	MobiDBLite	consensus disorder prediction	624	651	-	-
	Vvi16g0031	957	ProSitePatterns	Protein kinases ATP-binding region signature.	138	161	IPR017441	GO:0005524
	Vvi16g0031	957	Gene3D	Transferase(Phosphotransferase) domain 1	212	475	-	-
	Vvi16g0031	957	FunFam	Dual specificity tyrosine-phosphorylation-regulated kinase 1A	95	211	-	-
	Vvi16g0031	957	Pfam	Protein kinase domain	133	474	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi16g0031	Vvi-Chr16	308918	332353	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi16g0031	131	360	MAP Kinase Gene Family	AT3G18040	33.740	2.73e-30	124

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-YAK	Vvi16g0031		Pkinase	1.1e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi16g0031	K18670		-	vvi:100240775	1884.38