Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0030 ATGGCACCACCACCTTCTCTAGTCTTCTCAGTGCGAAGGAGCAAGCCAGAACTGGTGGCTCCGGCCAAGCCCACGCCCCACGAGTTCAAACCCCTGTCGGACATCGATGACCAGGAGGGTCTCCGTTTCCAAATCCCTGTCATACAGTTCTACAAAAAGGTCCCCTCCATGCATGGGAGGGACCCTGCCAAGGTGATCAAAGACGCGGTGGCTAGAGCGCTGGTCTTCTACTACCCCTTTGCCGGGAGGCTCAGGGAAGAGGCAGGGCGGAAGCTGGTGGTTGAGTGTACCGGTGAAGGTATCGTCTTCATTGAAGCCGATGCCGACGTTACGCTTGAGCAGTTCGGCGATGCTCTTCAGCCTCCATTCCCGGGCTTGGAGGAGCTCATTTACGATGCTCCGGGCTCCGGCGGGGTGCTCAACTCTCCATTATTGCTCATTCAGGTGACACGGCTCCAGTGCGGAGGGTTCATCTTTGGGCTGAGGCTGAACCATACCATGAGCGACGCGGCCGGCCTGGTCCAATTCATGAGCGCAGTGGGGGAGATGGCGCGTGGCGCCTCCGCCCCGTCGATTCCACCCGTGTGGCGGAGGGACCTTCTCAATGCTAGAGACCCGCCGCGCGTGACGCGCACGCACCACGAGTACGACGAAGTGGCCGACACCAAAGGCACCATCATCCCCCTCGATGACATGGAACATCGCTCCTTCTTCTTCGGCCCCACCGAGTTCGCCGCCCTCCGCCGCCTCCTCTCTCCCCACCTCCGCACCTGCTCCACCTTCGAGCTCCTCACCGCCTGCCTCTGGCGCTGCCGCACCATCGCCCTCCGCCCGGACCCGGAGGAGGAGGTGCGCGTGCTCTGCATCGTCAACGCGCGATCCAGGCTCCAACCCCCTCTCCCCGCCGGCTACTACGGCAACGTCTTCGGCTTCCCGGTGGCGCTGAGCTCCGCCGGAAAGCTCTGCCGGAACCCATTGGAGTACGCGCTTGACTTGGTGAAGGGGGCCAAAAACTCCGTCGACCAAGAGTACATGAAGTCAGTGGCGGATCTGATGGTCAGCACGGGGCGGCGACACTTCACGGTGGTGAGGAGCTACCTGGTGTCGGACCTGACACGCGCGGGGTTCGGGGACGTGGATTTTGGGTGGGGGAAGGCGGTATATGGTGGGGCGGCGAAGGGTGGGGTGGGGGCCATTCCTGGGGTGGCGAGCTTCTACATTCCGTTCAGAAATCATAAAGGAGAAGATGGGATAGTGGTCCCATTTTGCCTACCAGCAGCAGCCATGGAAATATTCGTGAAGGAATTGAATAGCTTGCTGAAGGAGGAGCACCCACTTCCTTCAAACAAGTCTTCCACCTTCATCATATCAGCACTGTAG 1380 0.6072 MAPPPSLVFSVRRSKPELVAPAKPTPHEFKPLSDIDDQEGLRFQIPVIQFYKKVPSMHGRDPAKVIKDAVARALVFYYPFAGRLREEAGRKLVVECTGEGIVFIEADADVTLEQFGDALQPPFPGLEELIYDAPGSGGVLNSPLLLIQVTRLQCGGFIFGLRLNHTMSDAAGLVQFMSAVGEMARGASAPSIPPVWRRDLLNARDPPRVTRTHHEYDEVADTKGTIIPLDDMEHRSFFFGPTEFAALRRLLSPHLRTCSTFELLTACLWRCRTIALRPDPEEEVRVLCIVNARSRLQPPLPAGYYGNVFGFPVALSSAGKLCRNPLEYALDLVKGAKNSVDQEYMKSVADLMVSTGRRHFTVVRSYLVSDLTRAGFGDVDFGWGKAVYGGAAKGGVGAIPGVASFYIPFRNHKGEDGIVVPFCLPAAAMEIFVKELNSLLKEEHPLPSNKSSTFIISAL* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0030 459 Gene3D - 218 436 IPR023213 -
Vvi16g0030 459 Pfam Transferase family 11 436 - -
Vvi16g0030 459 PANTHER ACYL TRANSFERASE 4 9 439 - -
Vvi16g0030 459 Gene3D - 7 217 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0030 Vvi-Chr16 284310 286590 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0030 42 436 Monolignol Biosynthesis Gene Families AT5G48930 31.068 4.08e-51 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0030 K19861 - vvi:100261281 900.582