Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0026 ATGGAAGCCGCGCTCTCTTGCTACTTCACCCTCCATTTCCGTTCCTCCTCCATCGCCTGCAATTCTCCCTTTCCGAAAACCCCTTTCTTTATCCGGGGTAGCTCCAATAGCGGCATTAAGACTAGCAATGGTACCAGGAGGAGAAGCCGCAGCAGCAAGAAGCCCACGCTTCTGAAAAATGTTAAGACAAATCATGTTGATTCTAGTGACCTTACTGCGGCTCCGCCCGTGGGAGGCCAGGAGGAGGGTGGGCCTGAGGAGAAGTCGAAGAATAAGCCGGTGAGCGTGCGTACTCTTTATCAGAATGGGGACCCACTGGGGCGGAGGGAACTGAGGAGGTGCGTGGTGAGGTGGATCAGCCAGGGGATGAGGGGCATGGCGTTGGATTTCGCTTCCGCGGAGTTGCAGGGGGAGTTCGCTGAGTTGAGGCAGCGGATGGGACCCGGTCTGAGTTTCGTAATCCAGGCACAGCCCTACCTCAATGCCATTCCTATGCCCCTTGGTCATGAAGCCATCTGCTTGAAGGCCTGCACTCATTACCCTACCCTCTTCGACCATTTCCAGAGAGAGTTGAGAGACGTCCTCCAGGATCACCAGCGGAAATCCCAGTTCCAAGATTGGCGTGAAACCCAGTCCTGGCAGCTGCTCAAGGAGCTTGCTAATTCAGCCCAGCATAGGGCTATCTCGCGCAAGGTATCTCAGCCGAAGCCCCTCAAAGGCGTTTTAGGAATGGAGCTGGACAAGGCCAAGGCTATACAGAGCAGGATCGATGAATTCACAAAGCGGATGTCTGAGCTGCTTCAAATAGAGCGGGATTCTGAGTTGGAGTTTACTCAGGAGGAATTGAATGCCGTTCCTACACCTGATGAGAGTTCTGATTCATCCAAACCTATTGAGTTCTTGGTCAGCCATGGCCAGGCTCAACAGGAACTCTGTGACACTATCTGCAATTTGAATGCTGTTAGCACTTTCATAGGATTAGGTGGAATGCATTTGGTATTGTTCAAGGTTGAGGGGAATCACCGATTGCCACCTACTACCCTTTCTCCTGGAGATATGGTCTGTGTGCGAATTTGTGATAGCAGGGGTGCAGGGGCAACGTCTTGCATGCAAGGATTTGTTGACAGTCTAGGCAAGGATGGGTGCAGCATCAGTGTAGCTCTGGAGTCTCGTCATGGTGATCCAACCTTCTCTAAGCTCTTTGGCAAGAGCGTGCGCATTGATCGCATTCATGGATTGGCTGATGCTCTCACATATGAGCGCAACTGTGAAGCCCTGATGCTGCTCCAAAAGAATGGTTTACAAAAGAAAAATCCTTCAATTGCTGTTGTGGCCACTCTTTTTGGAGACAAAGAAGATGTTGCATGGCTGGAAGAAAATGACTTGGTAGATTGGGCTGAGGTAGGTTTGGATGAACTATTGGAGAGTGGGGCTTATGATGATTCTCAGAGAAGAGCAATTGCCTTAGGGTTGAACAAGAAACGGCCCATACTGATAATCCAAGGGCCTCCTGGAACTGGAAAGACAGTTTTGCTCAAGGAACTCATAGCACTTGCCGTTCAACAAGGTGAAAGGGTGCTTGTCACAGCACCTACAAATGCAGCAGTGGATAACATGGTCGAAAAACTTTCTAATATTGGAGTAAACATTGTGCGCGTCGGCAATCCAGCACGGATATCCTCTGCAGTAGCTTCAAAATCTTTGGGTGAAATTGTGAATTCTAAGCTGGAAAATTTTCTAACTGAATTTGAAAGGAAGAAATCAGATCTAAGAAAAGACTTGAGACATTGTTTAAAGGATGACTCTTTAGCTGCTGGCATACGCCAGCTTCTAAAACAACTTGGAAAGGCACTGAAGAAGAAGGAAAAGGAAACTGTGAAGGAAGTATTATCAAGTGCACAAGTTGTGCTTGCCACTAACACTGGAGCAGCTGATCCTGTGATTAGAAGATTGGATGCCTTTGATCTCGTTATTATAGATGAAGCAGGACAAGCAATTGAACCTTCTTGCTGGATACCTATTTTGCAGGGAAAGCGCTGCATTATTGCTGGTGACCAATGTCAGCTTGCTCCTGTAATTCTATCTAGAAAAGCTTTGGAAGGTGGTCTTGGGGTGTCACTCCTGGAGAGAGCAGCAACTTTGCATGAGGAGGTTCTTGCCACCAAATTAACAACACAGTATCGAATGAATGATGCAATTGCCAGCTGGGCTTCAAAGGAGATGTACGGTGGATCATTGAAGTCTTCCTCCTCTGTCTTTTCTCATCTTCTGGTAGATTCTCCATTTGTGAAGCCTGCATGGATCACACAATGCCCATTGCTATTGCTTGATACAAGAATGCCATATGGAAGTTTATCAGTTGGTTGTGAAGAGCATTTGGATCCAGCTGGCACAGGTTCCTTTTACAATGAAGGGGAAGCAGATATCGTTGTGCAACACGTCTTGTCTTTGATTTCTGCTGGTGTTAGCCCAACAGCAATTGCAGTTCAATCTCCTTATGTTGCTCAAGTGCAACTGTTGAGAGACAGGCTTGATGAGATTCCAGAAGCTGTAGGTGTTGAGGTTGCAACTATTGATAGCTTTCAAGGCCGGGAGGCTGATGCAGTTATTATATCAATGGTTCGATCAAACACTCTAGGAGCAGTTGGCTTCCTGGGGGATAGCAGGCGAATGAACGTTGCAATAACAAGGGCAAGAAAACATGTAGCAGTGGTGTGTGATAGCTCAACAATATGCCACAACACATTCTTGGCCAGGCTCCTCCGTCATATCCGATACATCGGTAGAGTGAAGCATGCTGAGCCTGGGACTTTTGGGGGATCTGGACTCGGCATGAATCCAATGCTTCCATTCATCAGTTAG 2862 0.4773 MEAALSCYFTLHFRSSSIACNSPFPKTPFFIRGSSNSGIKTSNGTRRRSRSSKKPTLLKNVKTNHVDSSDLTAAPPVGGQEEGGPEEKSKNKPVSVRTLYQNGDPLGRRELRRCVVRWISQGMRGMALDFASAELQGEFAELRQRMGPGLSFVIQAQPYLNAIPMPLGHEAICLKACTHYPTLFDHFQRELRDVLQDHQRKSQFQDWRETQSWQLLKELANSAQHRAISRKVSQPKPLKGVLGMELDKAKAIQSRIDEFTKRMSELLQIERDSELEFTQEELNAVPTPDESSDSSKPIEFLVSHGQAQQELCDTICNLNAVSTFIGLGGMHLVLFKVEGNHRLPPTTLSPGDMVCVRICDSRGAGATSCMQGFVDSLGKDGCSISVALESRHGDPTFSKLFGKSVRIDRIHGLADALTYERNCEALMLLQKNGLQKKNPSIAVVATLFGDKEDVAWLEENDLVDWAEVGLDELLESGAYDDSQRRAIALGLNKKRPILIIQGPPGTGKTVLLKELIALAVQQGERVLVTAPTNAAVDNMVEKLSNIGVNIVRVGNPARISSAVASKSLGEIVNSKLENFLTEFERKKSDLRKDLRHCLKDDSLAAGIRQLLKQLGKALKKKEKETVKEVLSSAQVVLATNTGAADPVIRRLDAFDLVIIDEAGQAIEPSCWIPILQGKRCIIAGDQCQLAPVILSRKALEGGLGVSLLERAATLHEEVLATKLTTQYRMNDAIASWASKEMYGGSLKSSSSVFSHLLVDSPFVKPAWITQCPLLLLDTRMPYGSLSVGCEEHLDPAGTGSFYNEGEADIVVQHVLSLISAGVSPTAIAVQSPYVAQVQLLRDRLDEIPEAVGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRARKHVAVVCDSSTICHNTFLARLLRHIRYIGRVKHAEPGTFGGSGLGMNPMLPFIS* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0026 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 916 IPR027417 -
Vvi16g0026 953 SMART ultradead3 475 718 IPR014001 -
Vvi16g0026 953 FunFam DNA helicase A 727 935 - -
Vvi16g0026 953 Pfam AAA domain 479 695 IPR041677 GO:0004386
Vvi16g0026 953 Coils Coil 604 624 - -
Vvi16g0026 953 Gene3D - 727 935 IPR027417 -
Vvi16g0026 953 CDD SF1_C_Upf1 729 925 IPR047187 -
Vvi16g0026 953 Coils Coil 573 593 - -
Vvi16g0026 953 SMART AAA_5 494 709 IPR003593 GO:0016887
Vvi16g0026 953 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 137 936 - -
Vvi16g0026 953 CDD DEXXQc_SMUBP2 480 728 - -
Vvi16g0026 953 Pfam AAA domain 704 908 IPR041679 -
Vvi16g0026 953 MobiDBLite consensus disorder prediction 31 45 - -
Vvi16g0026 953 Gene3D - 282 413 - -
Vvi16g0026 953 FunFam DNA-binding protein SMUBP-2 isoform X2 282 413 - -
Vvi16g0026 953 Gene3D - 262 711 IPR027417 -
Vvi16g0026 953 MobiDBLite consensus disorder prediction 56 70 - -
Vvi16g0026 953 MobiDBLite consensus disorder prediction 31 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0026 Vvi-Chr16 244901 261727 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0026 478 668 Core DNA Replication Machinery Family AT1G08840 26.425 6.16e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0026 - - vvi:100261474 1819.28