Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0024 ATGGAACAAATAAATTGTGAGGAAACAAGACAAGAAGCTTTGGATTTGAAGTGTGAACAAATTCTTCCTGGTGTTGAGAAATCAGATGCTCTGTCTCCTAGCCCTGTTAAAACATCAGGAATTGTTGGAAACTTGAATTCTGAAACTGAAATTGCTTCATTGACGCCACAAAAGACAAGTGAGCCTTTACATGCTAATTTCAAAGAGAAAGAGATCAATCTTCCTGATAAATACAAGACCATAGCAGAGTTCTTTGATCGTATGAATTGTTCATTGAGATTGCTTGGTCTGCGTAAAAAGCCTACCACTTTTCAGAATATTTGTACTCAGGTGGAAATTCTGACAAAGAGAAAGTTCTCATACAGGCATCTTGCACAGATAAAGTATATACTTCCTGAAGTTGTACAAATTGATTATATCCTCATACATGATGTGAAAAGCCTGTGTATGAAGCCAGATATGAAAATTTCCTTGCTGTTTGATGTTATTGAAGGTCATCAGGAAAAGTCCACTTTTATGGCTCTGCGCCAAGTTTTTGCCTATAGGCTTTTAGATTTCTTTAACATTCATCCTGAGGGATGTGATATCCCAGAGGCCATATTGCCAGAGCCGTTTAACCAGAGAACTCAGAACATTATTCCGAAGTCATTGCCTGTGGATTCATCAATAGAATCTCAACCAACCTCTGAAGTTGAGTTGTTAGCAAACTCATGCCATCTTAATCCATCTTTCAGAAGACACTTCTCTGAGAAGGCTGTTGTGGCAGAAACAGGAAAGACCCAACTCTTAGCATCTCTAGTTCCATTGTTGTCTTCCAGTTCTGATATTGTCACTAACAAAGAAATAAAAAGCGAGCAACATAAGGAGTCTTCTGAGTTATATTCTGAATCCACCATTATTAAGCCCCCTGTTGGACTAATTTGTCCCCAAAGCTCTGTTAGTTCCAGTGCTTGTGAAAGCCCTTACCTGAAGCATCCTATGGTTTCTGATTGTTTAATGGTAGAAACGCCTGCACAGTTGACACCAAAGAGATCAATGCCCAGTTGTGACAACAAGTTGAAGACTGTGACTAGACAAATGGGAACTTCATGCCATATGCCCACAAAGAGGTCACTGGACTTTTCATGCCTGGAAGGTGATGAAAGTGTGCTGAACACTTTGGATGAGCCAGAATGTCACAAAGTTATACATGATACTCTTTCTCAAACAGTGGAGGCTAAAGGGGTTCATGTGGAAGAGGAGGCTTCTGGCTCTGCAGAACTTCTGCAAAAGGTAGAGGAGAGCAATGATTGCACTAGCAATGCTCATGAGATGAAGCAAAGGGTTTTAGTAACATCTCAGCAAGTGTCAACTTGCTTGGTTGACCTTGTTGCTTTGATTCACCGCATATTTCTATCTCTCGGCTGCTTTTCAATCACAAAAGAGGAGCTTGTGCACAAGATAATTATGAACAACTGTGATATCATTGAGAGAAGAGAGATTGAAGAACAGATTGAGCTTCTTGAAAAGCTGATTCCAGAGTGGATTTTCAGGAAGCTGGCACCTTGTGGAGATCTTTTGTACAGCATCAGGAAGGAGTCAAATTTGGATTCAGTTTGTGCAAGGCTCTGTAACGTAGGACAAGATTGCCATAGGGGGTGGTCACCTTAG 1650 0.4055 MEQINCEETRQEALDLKCEQILPGVEKSDALSPSPVKTSGIVGNLNSETEIASLTPQKTSEPLHANFKEKEINLPDKYKTIAEFFDRMNCSLRLLGLRKKPTTFQNICTQVEILTKRKFSYRHLAQIKYILPEVVQIDYILIHDVKSLCMKPDMKISLLFDVIEGHQEKSTFMALRQVFAYRLLDFFNIHPEGCDIPEAILPEPFNQRTQNIIPKSLPVDSSIESQPTSEVELLANSCHLNPSFRRHFSEKAVVAETGKTQLLASLVPLLSSSSDIVTNKEIKSEQHKESSELYSESTIIKPPVGLICPQSSVSSSACESPYLKHPMVSDCLMVETPAQLTPKRSMPSCDNKLKTVTRQMGTSCHMPTKRSLDFSCLEGDESVLNTLDEPECHKVIHDTLSQTVEAKGVHVEEEASGSAELLQKVEESNDCTSNAHEMKQRVLVTSQQVSTCLVDLVALIHRIFLSLGCFSITKEELVHKIIMNNCDIIERREIEEQIELLEKLIPEWIFRKLAPCGDLLYSIRKESNLDSVCARLCNVGQDCHRGWSP* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0024 549 SUPERFAMILY "Winged helix" DNA-binding domain 69 205 IPR036390 -
Vvi16g0024 549 Gene3D - 443 542 IPR038090 -
Vvi16g0024 549 PANTHER DNA REPLICATION FACTOR CDT1 57 537 IPR045173 GO:0003677|GO:0030174|GO:0071163
Vvi16g0024 549 FunFam CDT1-like protein a chloroplastic 442 540 - -
Vvi16g0024 549 Pfam DNA replication factor Cdt1 C-terminal domain 423 509 IPR032054 -
Vvi16g0024 549 CDD Cdt1_m 56 227 IPR014939 -
Vvi16g0024 549 SMART CDT1_2 74 203 IPR014939 -
Vvi16g0024 549 Pfam DNA replication factor CDT1 like 74 138 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0024 Vvi-Chr16 212106 229482 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0024 69 536 Core DNA Replication Machinery Family AT2G31270 32.305 7.86e-50 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0024 K10727 - vvi:100244348 1070.46