Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0019 ATGTCGTCCTCCTCCATCAAAACTCCCAATGTCATCACCTGCAGAGCTGCTGTGGGATATGGAGCTGGAGAGGCATTGGTGATAGAAGAAGTGGAAGTCAGCCCGCCACAGCCTATGGAGATTAGGATTAAAGTTGTCTCCACTTCTCTCTGCCGCAGTGATATCACCGCTTGGTCTCAGGCTCCTATATTTCCTCGGATTTTTGGTCATGAGGCCTCTGGGATTGTAGAGAGTGTGGGGGAAGGTGTGACTGAATTTGAAGAGGGGGACCATGTACTTACATTATTCACTGGAGAATGCATGACATGTAGACATTGCACCTCCGGTAAAAGCAACATGTGCCAAGTACTGGGGTTGGAAAGGAAAGGTGTAATGCACAGTGACCAGAAAACACGCTTCTCAATAAAAGGGAAGCCTATTTATCATTATTGTGCTGTTTCAAGTTTCAGCGAATATACAGTTGTGCACTCTGGATGTGCTTTGAAAGTCAGCTCACTTGCTCCTTTGGACAAAATATGCCTTCTTAGTTGTGGAGTATCTGCAGGTCTAGGAGCAGCTTGGAAGGTTGCCAATATAACCGAAGGATCAACTGTAGTCATTTTTGGACTTGGAACTGTTGGCCTTTCTGTCGCACAAGGTGCAAAACAAAGGGGGGCATCTAGAATAATTGGTGTTGACATTAATTCTGAAAAAATGGAAAAAGCCAAGGCTTTTGGAATAACAGAATTCGTAAACCCACATGACTGTAATGAGCCTGTTCAACAGGTAATTAAACAGATGACTGATGGTGGGGCAGATTACTCATTTGAATGTATAGGCGATACTGGAATGGTGACTACTGCATTACAATCATGTTGTGATGGATGGGGTTTGACTGTGACTCTGGGTGTGCCAAAAGTAAATCCAGAAATATCATCTCACTATGGATTATTTCTTTCTGGAAGAACGTTGAGAGGATCTTTATTTGGAGGATGGAGACCTAAATCTGATCTTCATTCATTAGTAGACATGTATATGAGGAAGGAAATCCAGATTGACGAATTCATCACTCATAATTTGCCTTTTGAGGATATTAACAAAGCTTTTGATCTCATGATGGAGGGGAAGTGTTTGCGTTGTGTTATCCACATGCCAAAGTAG 1140 0.4281 MSSSSIKTPNVITCRAAVGYGAGEALVIEEVEVSPPQPMEIRIKVVSTSLCRSDITAWSQAPIFPRIFGHEASGIVESVGEGVTEFEEGDHVLTLFTGECMTCRHCTSGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPIYHYCAVSSFSEYTVVHSGCALKVSSLAPLDKICLLSCGVSAGLGAAWKVANITEGSTVVIFGLGTVGLSVAQGAKQRGASRIIGVDINSEKMEKAKAFGITEFVNPHDCNEPVQQVIKQMTDGGADYSFECIGDTGMVTTALQSCCDGWGLTVTLGVPKVNPEISSHYGLFLSGRTLRGSLFGGWRPKSDLHSLVDMYMRKEIQIDEFITHNLPFEDINKAFDLMMEGKCLRCVIHMPK* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0019 379 SUPERFAMILY GroES-like 9 188 IPR011032 -
Vvi16g0019 379 PANTHER ALCOHOL DEHYDROGENASE 10 375 - -
Vvi16g0019 379 CDD alcohol_DH_plants 12 376 - -
Vvi16g0019 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 320 - -
Vvi16g0019 379 Pfam Alcohol dehydrogenase GroES-like domain 39 158 IPR013154 -
Vvi16g0019 379 Gene3D - 17 372 - -
Vvi16g0019 379 Gene3D - 182 320 - -
Vvi16g0019 379 Pfam Zinc-binding dehydrogenase 206 327 IPR013149 -
Vvi16g0019 379 SUPERFAMILY GroES-like 329 376 IPR011032 -
Vvi16g0019 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Vvi16g0019 379 FunFam Alcohol dehydrogenase 6 17 194 - -
Vvi16g0019 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Vvi16g0019 379 SMART PKS_ER_names_mod 21 375 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0019 Vvi-Chr16 168058 174190 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0019 40 367 Monolignol Biosynthesis Gene Families AT1G72680 23.324 4.30e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0019 K00001 - vvi:100254635 773.081