Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0016 ATGCGCTCATGGGTTTTCTGTTTCATTTCTGCTAGAGAAAATGTTTTTGGGAGAGATCTCGAGGTGGTACAGGCTGAAATCCAGGAAAGCTGTAAGAGAATTAATGAAAGTTTTGGGCAGCCAGATTATGACCCGATTGTATTTATTGATAGGTCATTTTATCTTAGTGAGAAAGCTGCATTTCACACCATTGCCAAGTGTGTCGTGGTGACAGCTGTCCGGGGTGGAATGAACCTTATCCCATATGAGTATATCATGCCCAGGCAGGGGGTCTCTATATCTGAATTTGGTTCTGAATTAAGAGGCCCCAAGAAGAGTATGCTAGTGGTATCGGGGTTCATAGGATGGTCCCCTTCGCTGAGTGATGCCATTAAAATTAATCCAAATAGAAGATGA 396 0.4293 MRSWVFCFISARENVFGRDLEVVQAEIQESCKRINESFGQPDYDPIVFIDRSFYLSEKAAFHTIAKCVVVTAVRGGMNLIPYEYIMPRQGVSISEFGSELRGPKKSMLVVSGFIGWSPSLSDAIKINPNRR* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0016 131 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 17 129 - -
Vvi16g0016 131 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 20 128 IPR001830 GO:0003824|GO:0005992
Vvi16g0016 131 Pfam Glycosyltransferase family 20 18 128 IPR001830 GO:0003824|GO:0005992
Vvi16g0016 131 Gene3D Glycogen Phosphorylase B; 3 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0016 Vvi-Chr16 150132 150527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0016 17 128 Trehalose Biosynthesis Gene Families AT1G06410 59.821 8.98e-38 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0016 K16055 - vvi:100265140 176.407