Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0013 ATGACTAACAATATTGGAACAGACTTGATACGCTATGAAGTTACAGATCCTAGTGACCACCCCTTGAATCCCAAGCCAGGAACTCTCAGATTCGGTGCCACCAACATTAAAGGAAAGGTGTGGATAACATTCAAACAAAGCATGAGAATCAAACTCGAGAAACCGCTACTCATTAGTAGTTTCACCACCATTGATGGGAGAGGTGCCAGCATTCACATTGCAGGAGGTGCATGCCTCTTGCTTCATGAGGTGACTAATGTAATCATCCACGGTATCCGGATTCACCACTGCCGAGCCCAAATGCCTGGTCAAGTGTTGGGTCCAGATTCAAAGATGATGGAGCTGGGTCATGTAGATGGGGATGCAATCAGGCTGGTTGCATCCTCACAAATTTGGATAGATCACAATACACTCTACGAGTGCCAGGATGGTCTCCTGGATGTCACCCGTGGTTCTACAGACATCACCATCTCAAACAACTGGTTCAGAAATCATGATAAAGTTATGCTCCTAGGCCATGATGATGAGTATCTTCAAGACAAGAACATGAAGGTAACAGTTGCCTTCAACCATTTTGGTCCTAATTGCTACCAGCGGATGCCAAGGGTCCGCCATGGATATACACATGTAGTCAACAATCTCTATCTGGGATGGGAACAGTATGCCATAGGAGGAAGCATGAACCCTAGCGTTTTGAGTGAAGCAAACCTCTTTATTGCACCAGAATCAGGGACGAAAGAGGTAACCTGGAGACAAGACAACAATGAAAATGGAAGATCATGGAATTTTCAGTCTGTGAGGGATGTTTTTGAAAATGGAGCTCATTTCAGCCAAACAGGTGACTCTGCAAAAAGGCCACACTATAACCATCTACAGACGTTCCGAGTTGCAGATGCCAAAGCAGTAAGGCCAATTACAAGGTCATCAGGTGCTTTGCGATGCCGTAAAAGATCCAGATGCTGA 963 0.4528 MTNNIGTDLIRYEVTDPSDHPLNPKPGTLRFGATNIKGKVWITFKQSMRIKLEKPLLISSFTTIDGRGASIHIAGGACLLLHEVTNVIIHGIRIHHCRAQMPGQVLGPDSKMMELGHVDGDAIRLVASSQIWIDHNTLYECQDGLLDVTRGSTDITISNNWFRNHDKVMLLGHDDEYLQDKNMKVTVAFNHFGPNCYQRMPRVRHGYTHVVNNLYLGWEQYAIGGSMNPSVLSEANLFIAPESGTKEVTWRQDNNENGRSWNFQSVRDVFENGAHFSQTGDSAKRPHYNHLQTFRVADAKAVRPITRSSGALRCRKRSRC* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0013 320 SUPERFAMILY Pectin lyase-like 11 316 IPR011050 -
Vvi16g0013 320 Gene3D - 6 313 IPR012334 -
Vvi16g0013 320 Pfam Pectate lyase 58 238 IPR002022 -
Vvi16g0013 320 PRINTS Pollen allergen Amb family signature 18 43 IPR018082 -
Vvi16g0013 320 PRINTS Pollen allergen Amb family signature 119 140 IPR018082 -
Vvi16g0013 320 PRINTS Pollen allergen Amb family signature 55 71 IPR018082 -
Vvi16g0013 320 PRINTS Pollen allergen Amb family signature 199 218 IPR018082 -
Vvi16g0013 320 PRINTS Pollen allergen Amb family signature 261 285 IPR018082 -
Vvi16g0013 320 PRINTS Pollen allergen Amb family signature 221 240 IPR018082 -
Vvi16g0013 320 PRINTS Pollen allergen Amb family signature 291 314 IPR018082 -
Vvi16g0013 320 PANTHER PECTATE LYASE 18-RELATED 6 317 IPR045032 GO:0030570
Vvi16g0013 320 SMART amb_all 47 244 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0013 Vvi-Chr16 133249 134689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0013 1 248 Polysaccharide Lyase AT5G09280 71.371 1.25e-141 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0013 K01728 - vvi:100247757 669.077