Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi16g0010 | ATGCTTATCAGCAGTCTAGCTGTGATTGTGGCCATCACCATGAGCTTGGCTGCAAAAGCTTTATTCCTTGTTTCTGCAGTTGTTGTGATTCAATTTTCAGGCGTGGTGTCTCAGGCGACAAATGAGTACTTCCCGGATGAAAGAGAAGCGTTGATGCAGATAAGGGATATTGTAAACGCAACAGTTGATCTACATAAGAACTGGACAGGACCCCCTTGTCAAGAAGATGTGAGCAAATGGTTTGGAATCACTTGTTCCAAAGGCCACATTATCCGCATTGTTCTTGAAGGAATTGAGCTCACCGGCTCTTTCCCACCTGCATTCCTACAAAAGATCGCCTTTCTGAATACGGTCAGCTTCAAAAACAATTCAGTTTTTGGCCCTATTCCCAACCTCACTGGCCTAATCCACCTTGAATCCGTGTTCTTCTCCCAAAACAACTTCTCCGGTTCCATTCCTTTGGACTACATTGGATTGCCCAATTTAACTGTTCTAGAGCTGCAAGAGAATTCTCTTGGTGGCCATATCCCACCTTTTGATCAACCAACCTTGACAACCTTCAACGTCTCATATAATCATCTTGAGGGCCCGATCCCAGAAACTCCTGTGCTTCAAAGATTCCCAGAGAGCTCTTATGATCATAACTCCCATCTGTGTGGGCTTCCTCTCGGAAAAGTGTGTCCTGCTTTTCCTCCTGCTCCTGCCACTGCCACAGCACCTCCTCCCCACATTTCTCCAAATCCATCCAAGGAAAAGAAAAAGGGACTCGAAATATGGGGTGTTGCTTTGATTGTGGCTGCAGCAACATTGGTTCCTGTCCTAGTTATGGTTGTTTTCTTGTGTTATTATAGGAAGTCACAGAGGAAAGAAGCAACAACAGGGCAACAGACAGGAGAGGGTTCCGTAGAGTGGGCAGAAAAGAGAAGACATAGCTGGGAGAGCAGAGGGGATCCTGAAAGGACGGTAGCACTAGAATTTTTCGATAAGGATATACCGGTTTTTGACCTGGATGATTTGCTAAGGGCATCGGCAGAAGTGATGGGGAAAGGGAAACTGGGCACTACGTACAAAGCAACACTGGAATCGGGTTCTGCAGTTGCTGTGAAGAGACTCAAAGATTTGAACGGGTTGAGCAAGAAGGAATTTGTCCAGCAGATGCAGTTGCTGGGAAAGACGAGGCATGAAAACCTGGTCGAAATCGTCTCTTTCTACTACTCTAAGGAGGAGAAGCTGGTGGTCTATGAGTTTGTTCCTCATGGAAGCTTGTTTGAGCTTTTACATGAGAATAGAGGAGCTGCAAGAGTGCCTTTGAATTGGAGTAGAAGACTATCCATTATCAAAGACATAGCAAAGGGTCTCACTTTTCTTCATCAATCCTTACCTTCTCACAAGGTGCCCCATGCCAACCTCAAATCATCCAATGTTCTTATCCACTCCACCGGCCAGAACTGCCATTCCAAACTCGTGGATTTCGGCTTCTTGCCCCTTCTGCCCTCTCGTAAATCCTCTGAAAAACTAGCCGTAGCCAAGTCACCTGAATTCGCTCTAGGAAAGAAGCTGACACAAAAGGCAGATGTCTACTGCTTCGGCATCATTATACTGGAGGTCATCACTGGGAGGATCCCAGGTGAAGCTTCACCAGGGATCAATGCAACAGTTGAGGACCTTTCTGATTGGGTAAGAACAGCAGTGAATAATGATTGGTCCACAGATGTATTAGACGTAGAGATAGTAGCAGCAAGAGAAGGGCATGATGAGATGTTGAAGCTCACAGGGATAGCTCTGGAATGTACAGATACAACACCAGAGAAGCGACCAAAGATGACTGAAGTGTTGAGAAGAATACAAGAAATTGAGGACATGGGAGAAAAACAAATAAGTGGAAGTGAAGCAAGTTGA | 1899 | 0.456 | MLISSLAVIVAITMSLAAKALFLVSAVVVIQFSGVVSQATNEYFPDEREALMQIRDIVNATVDLHKNWTGPPCQEDVSKWFGITCSKGHIIRIVLEGIELTGSFPPAFLQKIAFLNTVSFKNNSVFGPIPNLTGLIHLESVFFSQNNFSGSIPLDYIGLPNLTVLELQENSLGGHIPPFDQPTLTTFNVSYNHLEGPIPETPVLQRFPESSYDHNSHLCGLPLGKVCPAFPPAPATATAPPPHISPNPSKEKKKGLEIWGVALIVAAATLVPVLVMVVFLCYYRKSQRKEATTGQQTGEGSVEWAEKRRHSWESRGDPERTVALEFFDKDIPVFDLDDLLRASAEVMGKGKLGTTYKATLESGSAVAVKRLKDLNGLSKKEFVQQMQLLGKTRHENLVEIVSFYYSKEEKLVVYEFVPHGSLFELLHENRGAARVPLNWSRRLSIIKDIAKGLTFLHQSLPSHKVPHANLKSSNVLIHSTGQNCHSKLVDFGFLPLLPSRKSSEKLAVAKSPEFALGKKLTQKADVYCFGIIILEVITGRIPGEASPGINATVEDLSDWVRTAVNNDWSTDVLDVEIVAAREGHDEMLKLTGIALECTDTTPEKRPKMTEVLRRIQEIEDMGEKQISGSEAS* | 633 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi16g0010 | 632 | Gene3D | Ribonuclease Inhibitor | 45 | 229 | IPR032675 | - | |
Vvi16g0010 | 632 | Pfam | Protein kinase domain | 345 | 613 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi16g0010 | 632 | ProSiteProfiles | Protein kinase domain profile. | 341 | 618 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi16g0010 | 632 | SUPERFAMILY | Protein kinase-like (PK-like) | 345 | 618 | IPR011009 | - | |
Vvi16g0010 | 632 | Gene3D | Transferase(Phosphotransferase) domain 1 | 417 | 630 | - | - | |
Vvi16g0010 | 632 | MobiDBLite | consensus disorder prediction | 290 | 312 | - | - | |
Vvi16g0010 | 632 | Gene3D | Phosphorylase Kinase; domain 1 | 307 | 416 | - | - | |
Vvi16g0010 | 632 | SUPERFAMILY | L domain-like | 44 | 221 | - | - | |
Vvi16g0010 | 632 | FunFam | Leucine-rich repeat receptor-like kinase | 46 | 159 | - | - | |
Vvi16g0010 | 632 | CDD | STKc_IRAK | 347 | 618 | - | - | |
Vvi16g0010 | 632 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 | 24 | 625 | IPR046959 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi16g0010 | Vvi-Chr16 | 105683 | 107912 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi16g0010 | 47 | 632 | Receptor kinase-like Gene Family | AT1G68400 | 35.322 | 4.70e-116 | 359 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-III | Vvi16g0010 | Pkinase | 5e-32 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi16g0010 | - | - | vvi:100245984 | 1240.71 |