Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0010 ATGCTTATCAGCAGTCTAGCTGTGATTGTGGCCATCACCATGAGCTTGGCTGCAAAAGCTTTATTCCTTGTTTCTGCAGTTGTTGTGATTCAATTTTCAGGCGTGGTGTCTCAGGCGACAAATGAGTACTTCCCGGATGAAAGAGAAGCGTTGATGCAGATAAGGGATATTGTAAACGCAACAGTTGATCTACATAAGAACTGGACAGGACCCCCTTGTCAAGAAGATGTGAGCAAATGGTTTGGAATCACTTGTTCCAAAGGCCACATTATCCGCATTGTTCTTGAAGGAATTGAGCTCACCGGCTCTTTCCCACCTGCATTCCTACAAAAGATCGCCTTTCTGAATACGGTCAGCTTCAAAAACAATTCAGTTTTTGGCCCTATTCCCAACCTCACTGGCCTAATCCACCTTGAATCCGTGTTCTTCTCCCAAAACAACTTCTCCGGTTCCATTCCTTTGGACTACATTGGATTGCCCAATTTAACTGTTCTAGAGCTGCAAGAGAATTCTCTTGGTGGCCATATCCCACCTTTTGATCAACCAACCTTGACAACCTTCAACGTCTCATATAATCATCTTGAGGGCCCGATCCCAGAAACTCCTGTGCTTCAAAGATTCCCAGAGAGCTCTTATGATCATAACTCCCATCTGTGTGGGCTTCCTCTCGGAAAAGTGTGTCCTGCTTTTCCTCCTGCTCCTGCCACTGCCACAGCACCTCCTCCCCACATTTCTCCAAATCCATCCAAGGAAAAGAAAAAGGGACTCGAAATATGGGGTGTTGCTTTGATTGTGGCTGCAGCAACATTGGTTCCTGTCCTAGTTATGGTTGTTTTCTTGTGTTATTATAGGAAGTCACAGAGGAAAGAAGCAACAACAGGGCAACAGACAGGAGAGGGTTCCGTAGAGTGGGCAGAAAAGAGAAGACATAGCTGGGAGAGCAGAGGGGATCCTGAAAGGACGGTAGCACTAGAATTTTTCGATAAGGATATACCGGTTTTTGACCTGGATGATTTGCTAAGGGCATCGGCAGAAGTGATGGGGAAAGGGAAACTGGGCACTACGTACAAAGCAACACTGGAATCGGGTTCTGCAGTTGCTGTGAAGAGACTCAAAGATTTGAACGGGTTGAGCAAGAAGGAATTTGTCCAGCAGATGCAGTTGCTGGGAAAGACGAGGCATGAAAACCTGGTCGAAATCGTCTCTTTCTACTACTCTAAGGAGGAGAAGCTGGTGGTCTATGAGTTTGTTCCTCATGGAAGCTTGTTTGAGCTTTTACATGAGAATAGAGGAGCTGCAAGAGTGCCTTTGAATTGGAGTAGAAGACTATCCATTATCAAAGACATAGCAAAGGGTCTCACTTTTCTTCATCAATCCTTACCTTCTCACAAGGTGCCCCATGCCAACCTCAAATCATCCAATGTTCTTATCCACTCCACCGGCCAGAACTGCCATTCCAAACTCGTGGATTTCGGCTTCTTGCCCCTTCTGCCCTCTCGTAAATCCTCTGAAAAACTAGCCGTAGCCAAGTCACCTGAATTCGCTCTAGGAAAGAAGCTGACACAAAAGGCAGATGTCTACTGCTTCGGCATCATTATACTGGAGGTCATCACTGGGAGGATCCCAGGTGAAGCTTCACCAGGGATCAATGCAACAGTTGAGGACCTTTCTGATTGGGTAAGAACAGCAGTGAATAATGATTGGTCCACAGATGTATTAGACGTAGAGATAGTAGCAGCAAGAGAAGGGCATGATGAGATGTTGAAGCTCACAGGGATAGCTCTGGAATGTACAGATACAACACCAGAGAAGCGACCAAAGATGACTGAAGTGTTGAGAAGAATACAAGAAATTGAGGACATGGGAGAAAAACAAATAAGTGGAAGTGAAGCAAGTTGA 1899 0.456 MLISSLAVIVAITMSLAAKALFLVSAVVVIQFSGVVSQATNEYFPDEREALMQIRDIVNATVDLHKNWTGPPCQEDVSKWFGITCSKGHIIRIVLEGIELTGSFPPAFLQKIAFLNTVSFKNNSVFGPIPNLTGLIHLESVFFSQNNFSGSIPLDYIGLPNLTVLELQENSLGGHIPPFDQPTLTTFNVSYNHLEGPIPETPVLQRFPESSYDHNSHLCGLPLGKVCPAFPPAPATATAPPPHISPNPSKEKKKGLEIWGVALIVAAATLVPVLVMVVFLCYYRKSQRKEATTGQQTGEGSVEWAEKRRHSWESRGDPERTVALEFFDKDIPVFDLDDLLRASAEVMGKGKLGTTYKATLESGSAVAVKRLKDLNGLSKKEFVQQMQLLGKTRHENLVEIVSFYYSKEEKLVVYEFVPHGSLFELLHENRGAARVPLNWSRRLSIIKDIAKGLTFLHQSLPSHKVPHANLKSSNVLIHSTGQNCHSKLVDFGFLPLLPSRKSSEKLAVAKSPEFALGKKLTQKADVYCFGIIILEVITGRIPGEASPGINATVEDLSDWVRTAVNNDWSTDVLDVEIVAAREGHDEMLKLTGIALECTDTTPEKRPKMTEVLRRIQEIEDMGEKQISGSEAS* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0010 632 Gene3D Ribonuclease Inhibitor 45 229 IPR032675 -
Vvi16g0010 632 Pfam Protein kinase domain 345 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0010 632 ProSiteProfiles Protein kinase domain profile. 341 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0010 632 SUPERFAMILY Protein kinase-like (PK-like) 345 618 IPR011009 -
Vvi16g0010 632 Gene3D Transferase(Phosphotransferase) domain 1 417 630 - -
Vvi16g0010 632 MobiDBLite consensus disorder prediction 290 312 - -
Vvi16g0010 632 Gene3D Phosphorylase Kinase; domain 1 307 416 - -
Vvi16g0010 632 SUPERFAMILY L domain-like 44 221 - -
Vvi16g0010 632 FunFam Leucine-rich repeat receptor-like kinase 46 159 - -
Vvi16g0010 632 CDD STKc_IRAK 347 618 - -
Vvi16g0010 632 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 625 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0010 Vvi-Chr16 105683 107912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0010 47 632 Receptor kinase-like Gene Family AT1G68400 35.322 4.70e-116 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi16g0010 Pkinase 5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0010 - - vvi:100245984 1240.71