Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0009 ATGATGCCACCTCGTAGATATGCGTTTGGGAGGGCAGAGGAGGCCACCCACCCTGACTCCATGAGAGCCACCTTGTCTGAACTCGTCGCCACTTTCATTTTCGTCTTTGCAGGGGAAGGCTCCGTTCTTGCTCTAGGTAAGTTATATGCAGGTGCGACGGCTTTAACAGTTCCGGCTCTGGTGATGGTGGCACTTGCACATGGGTTGGCGCTGTTTGCTGCGGTGTCGGCAAGCATCAACGTATCAGGGGGGCATGTGAACCCAGCTGTTACCTTCGGTGCCCTTGTGGGTGGCAGAATCTCTCTCCTCCGTGCTTTGTACTACTGGGTTGCTCAGCTCTTGGGTGCTGTTCTCGCTGCTCTCCTCTTGAGGTTCGCCACTGGTGGCCTGAGGCCAGTGGGATTCACAGTAGCCTCAGGATACGACGAGTGGCATGCAATGCTTCTCGAGATAGCAATGACATTTGGGCTGGTGTACACAGTGTATGCGACTGCAATTGATCCAAAGAGGGGGAGTCTGGGAGTGATAGCGCCACTGGCCATAGGGTTCATAGTTGGGGCAAACATACTTGTGGGAGGAGCCTTTGATGGAGCATCGATGAACCCAGCAAGGGCATTTGGGCCTGCTCTTGTGGGTTGGAGGTGGAGGTACCAGTGGGTGTACTGGGTGGGGCCTCTTGTTGGTGGTGCTCTTGCTGCTCTCATATATGAATTTCTCGTAATACCCACCGAGCCCCAACATATTCACACACACCACCAGCCTTTGGCTCCTGAGGACTACTAG 783 0.5453 MMPPRRYAFGRAEEATHPDSMRATLSELVATFIFVFAGEGSVLALGKLYAGATALTVPALVMVALAHGLALFAAVSASINVSGGHVNPAVTFGALVGGRISLLRALYYWVAQLLGAVLAALLLRFATGGLRPVGFTVASGYDEWHAMLLEIAMTFGLVYTVYATAIDPKRGSLGVIAPLAIGFIVGANILVGGAFDGASMNPARAFGPALVGWRWRYQWVYWVGPLVGGALAALIYEFLVIPTEPQHIHTHHQPLAPEDY* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0009 260 PRINTS Major intrinsic protein family signature 104 123 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g0009 260 PRINTS Major intrinsic protein family signature 67 91 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g0009 260 PRINTS Major intrinsic protein family signature 149 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g0009 260 PRINTS Major intrinsic protein family signature 219 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g0009 260 PRINTS Major intrinsic protein family signature 22 41 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g0009 260 PRINTS Major intrinsic protein family signature 182 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g0009 260 CDD MIP 22 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g0009 260 Gene3D Glycerol uptake facilitator protein. 6 250 IPR023271 -
Vvi16g0009 260 PANTHER AQUAPORIN-8 7 249 IPR034294 -
Vvi16g0009 260 ProSitePatterns MIP family signature. 85 93 IPR022357 -
Vvi16g0009 260 FunFam Probable aquaporin TIP1-1 5 253 - -
Vvi16g0009 260 SUPERFAMILY Aquaporin-like 14 250 IPR023271 -
Vvi16g0009 260 Pfam Major intrinsic protein 15 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g0009 260 NCBIfam MIP family channel protein 27 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0009 Vvi-Chr16 102471 103442 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0009 5 260 Major Intrinsic Protein MIP AT1G17810 74.427 1.13e-125 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0009 K09873 - vvi:100252897 517.309