Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0001 ATGAGGAACTCTGCAAATAATGCAATGATGGAGATAGAAGCAAGCAAACCACCGGCGATGGGGTATGTTGTAGGGGGCTTGAGCCCTCTGAGTGAAACTCTGTGGAAGGAGAGGACTGATACAGAATTTGTAGGGGACGTGTCAGCAAGGCTCACTTGGAAGGATCTGACTGTGATGGTAACGCTCAGCAACGGAGAGACCCAAAAGGTATTGGAAGGACTAACTGGTTATGCAGAGCCTGGGACCTTTACTGCACTCATGGGTCCTTCTGGTTCAGGAAAATCCACGCTTCTTGATGCTTTATCCAGTCGACTTGCTGCCAATGCATTCCTCTCTGGCTCCATCCTCCTCAATGGTCGAAAGACAAAGCTCTCCTTTGGGACTGCAGCCTACGTGACTCAAGATGACAACTTGATTGGTACTCTCACAGTAAGGGAGACAATCTCATATTCAGCTAGACTACGCCTCCCTGATAAGATGCGTTGGTCAGAGAAGCGTGCATTGGTGGAGAGTACTATAATAGAAATGGGTCTTCAAGACTGCGCGGATACAGTTATTGGCAATTGGCATTTGCGTGGGATAAGTGGAGGGGAGAAGAGAAGAGTCAGCATTGCTCTTGAAATCCTGATGAGGCCGAGACTACTTTTCCTTGATGAGCCAACAAGTGGACTTGATAGCGCATCGGCCTTCTTTGTAACCCAGACTTTACGTGGCTTATCTAGGGATGGGAGGACTGTCATAGCTTCAATCCACCAGCCTAGCAGTGAAGTTTTTGAGCTGTTTGATCGGTTGTACTTGCTTTCTGGAGGCAAAACTGTTTATTTTGGTCAGGCTTCAGAAGCATATGAGTTCTTCGCACAAGCTGGCTTTCCCTGCCCTACTCTGAGAAATCCATCTGATCATTTTCTTCGGTGCATAAATTCTGATTTTGACAAAGTTAAGGCCACTCTGAAAGGATCCATGAAACTAAGGTTTGAGATAAGTGATGATCCTCTAGAGAAGGTAACCACAGCTGAAGCTATCCGAACTCTCATTGATTTCTATCGCACTTCTCAGTACTCTTATGCAGCAAAAGAAAAAGTTGAAGAGATATCCAAAGTTAAAGGAACAGTGCTAGATTCAGGAGGCAGTCAGGCTAGTTTCTTGATGCAGGCCTTTACCTTAACCAAGCGTTCGTTCATCAACATGTCCAGGGACTTTGGGTATTACTGGCTGAGGCTAGTAATCTACATTGTGGTCACTATTTGCATTGGAACCATTTACTTGGACGTGGGGACGAGTTACAATTCCATTCTGGCAAGGGGTTCATGTGCGTCTTTTGTCTTTGGTTTCGTCACGTTCATGTCTATTGGTGGGTTTCCATCCTTTGTAGAAGATATGAAGGTTTTCCAAAGGGAGAGACTGAATGGTCATTATGGCGTTACAGCATTTGTCATCAGCAACACAATCTCTGCAATGCCGTTCTTGATTTTGATCACCTTTATATCTGGAACTGTTTGCTACTTCATGGTCCACCTCCACCCGGGCTTCTTACATTATCTATTTTTCGTGTTGTGCCTTTATGCGAGTGTCACTGTAGTTGAAAGCTTGATGATGGCAATAGCCAGTGTTATCCCCAACTTCCTCATGGGTATCATCATAGGAGCTGGAATTCAGGGAATATTCATGCTTGTTTCTGGCTACTTTAGGCTGCCTAACGACATCCCGAAGCCTGTGTGGCGTTATCCCATGTCTTACATCAGCTTTCATTTCTGGGCTCTACAGGGACAATACCAAAATGATTTGAAAGGGCTGATGTTCGATAACCAGACACCGAATGGTCTTCCCAAGATTCCTGGGGACTATATTCTGGAGAACGTGTTCCAGATTAATGTGAAGCGATCGAAATGGATAGATCTGAGCGTTATCTTCAGCATGATTGTGGTATACCGCATCATATTCTTCATCATGATCAAGATCAATGAGGATGTGACCCCCTGGGTGAGAGGTTACATAGCAAGGAGAAGAATGCAGCAGAAGAATGGAAACCAGACAACAACAATCGCTCCAGATGGCCTTACACAGTCCCCTTCTCTTAGGTCCTATGTGGCCACAACTGGGACTGGTAGTAAAAGGTAG 2118 0.4533 MRNSANNAMMEIEASKPPAMGYVVGGLSPLSETLWKERTDTEFVGDVSARLTWKDLTVMVTLSNGETQKVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGSILLNGRKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMRWSEKRALVESTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRGLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASEAYEFFAQAGFPCPTLRNPSDHFLRCINSDFDKVKATLKGSMKLRFEISDDPLEKVTTAEAIRTLIDFYRTSQYSYAAKEKVEEISKVKGTVLDSGGSQASFLMQAFTLTKRSFINMSRDFGYYWLRLVIYIVVTICIGTIYLDVGTSYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTISAMPFLILITFISGTVCYFMVHLHPGFLHYLFFVLCLYASVTVVESLMMAIASVIPNFLMGIIIGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYISFHFWALQGQYQNDLKGLMFDNQTPNGLPKIPGDYILENVFQINVKRSKWIDLSVIFSMIVVYRIIFFIMIKINEDVTPWVRGYIARRRMQQKNGNQTTTIAPDGLTQSPSLRSYVATTGTGSKR* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0001 705 SMART AAA_5 80 270 IPR003593 GO:0016887
Vvi16g0001 705 Pfam ABC-2 type transporter 384 590 IPR013525 GO:0016020|GO:0140359
Vvi16g0001 705 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 40 673 - -
Vvi16g0001 705 FunFam ABC transporter G family member 11 45 288 - -
Vvi16g0001 705 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 51 294 IPR003439 GO:0005524
Vvi16g0001 705 Pfam ABC transporter 73 222 IPR003439 GO:0005524
Vvi16g0001 705 CDD ABCG_EPDR 48 276 - -
Vvi16g0001 705 ProSitePatterns ABC transporters family signature. 194 208 IPR017871 GO:0005524|GO:0016887
Vvi16g0001 705 Gene3D - 45 289 IPR027417 -
Vvi16g0001 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 289 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0001 Vvi-Chr16 7902 11647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0001 69 282 Calmodulin-binding Proteins AT2G36910 31.390 9.23e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0001 K05681 - vvi:100263167 1389.79