Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1216 ATGTGGTACAGGTGGCATGCTGTCGCATCATGGACATGGGATGCCCAAGATGAAACCTGTGGGATTTGTAGGATGGCATTTGATGGTTGTTGTCCTGATTGTAAACTCCCTGGAGATGATTGCCCGCTAATTTGGGGTGCTTGCAACCATGCATTTCATCTCCATTGCATCTTGAAATGGGTGAATTCGCAGACTCCTCAAGCGCATTGCCCCATGTGCCGTAGGGAATGGCAGTTCAAAGGATGA 246 0.4878 MWYRWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKG* 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1216 81 CDD RING-H2_APC11 17 79 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Vvi15g1216 81 ProSiteProfiles Zinc finger RING-type profile. 31 74 IPR001841 -
Vvi15g1216 81 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 4 80 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Vvi15g1216 81 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 81 IPR013083 -
Vvi15g1216 81 SUPERFAMILY RING/U-box 4 80 - -
Vvi15g1216 81 PANTHER RING BOX 3 80 - -
Vvi15g1216 81 FunFam Anaphase-promoting complex subunit 11 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1216 Vvi-Chr15 20300677 20302179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1216 31 74 C3H Transcription Factor Family AT1G72220 41.304 6.25e-07 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1216 K03358 - oeu:111382202 193.741