Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1188 ATGGATTTTGCATGTAGTTTTCGGCAGCCCAATGTTTTTCTTAATGGTGAAGGCACAAGTTATAAAACCTTGGATCGATTTTATTCGCGCTTTAGGTTTCGAAGTCCAGGTTTTAATAACAACTCTATTGGAAATCCAAAGCTTATTTCCAGAGCATATCCAAATAAAAAGATGAAGAAAATGATTGCCTTTAGTGGTTTCAATATGACCAGGGTTTTCAAGCAAGAGTTTGAGGGTAAGAATTTAAGGAGATCATTGATTTACGATTTTAATATTGCTTTAAGTTGTTCAAGGGCTAAGTGTCAAAGCAATGATTCTTTAGCATATATTGATGGCAATGGTAGAAATGTAGAATTTTTAGAAAGTCATGATGAGAGTTCAATAGCTGGACCTGATGATGGTGACCAGTTGAATAGGTTGGGAGAGGGAGAAGGAGAAGGGGAAGTAGTGGAAGCGCTGAGTTTGGATGAATTGAGGGAAGTGTTGCAGAAGGCTATTAAAGAATTGGAAGTTGCAAGTCTTAATAGTACCATGTTTGAGGATAAGGCTCAGAAAATATCAGAAGCCGCCATAGCCTTGCAGGATGAAGCAGCAATTGCTTGGAATGATGTTAATTCTGTGCTTAATACTATTCAAGAAATTGTAAATGAAGAATGTATTGCCAAAGAAGCTGTTCAGAAAGCAACAATGGCTCTTTCTTTAGCTGAAGCGAGGCTTCAGGTGGCTAAAGAATCATTGGAAGCTGCAAAAATAGTGAGTATTTCACCAGAAAGTTCTAGAGAGAGTGACTCAGAAGATGAAAGCAGAATGGAAGGGTTTAGTTCATTAAGGAAAGAGGAAGAGGCATTTTTAGTTGCCCAGGAAGATATTAGGCACTGTAAGGCAACTTTATTGAGTTGTGAGGCAGAGCTGAAACGCTTGCAGTGTAGAAAGGAGGAGTTGCAGAAGGAAGTGGATAAGTTGAATGAAAAGGCAGAGAAAACACAGATGGATGCTTTGAAAGCAGAGGAGGAGGTGGCAAACATAATGCTTTTGGCAGAACAAGCTGTTGCTTTTGAACTCGAGGCTACACAGCATGTTAATGATGCAGAGATTGCCATACAGAAAGTAGAGAAGAGTCTCTCAAATTCTCAGGTTGAAACCCCTGAAACTACTCAAGGACCAGTCTTCAGTGATGAGACTCTTGTTGAGGAGGAAAAGGCAAGTCAAGGAATTTCTGGTGATGTTAGTGTTGAAAGAGAGAGAGATATGCCAACTGAAGGTGTTAGTTTTCTTAGCGAGTCTTTATCAGATAGCCAGCCTTTTGAAGAGTTGAAACAATATGATGATTTGAGTGATCAAGAGAATGGGAAATTAAGTTTGGAGTCTCCTAAAGAACCTGAAGCAGAAACAGAAAAATCAAAGACTGGGGTTCAAACAAAAAAACAGGAAACACAGAAGGATTTGACAAGGGACAGTTCAATGTTAAATGCTCCAAAAATATTATTAAAGAAATCTTCTCGGTTCTTTTCTGCATCATTCTTCTCTTTCACAGTAGATGGGACAGATCTCATGGAGTCTGCTAGGAGGCAATTCCCCAAGTTGGTTGTTGGAATGTTGCTTCTCGGGGCTGGGGTCACCTTTTATTCTAATCGAGCAGAGAGGAGTTCTCTGGTGCTTCATCAACCAGATGTCATTACCACTAGTATTGAAGAAGTTTCCTCAAATGCGAAGCCTCTGGTCCGACAGATACGAAAACTGCCCAAGAGAATTAAGAAACTAATTGCTATGCTTCCTCACCAAGAGATGAATGAGGAAGAAGCTTCCCTTTTTGACATGTTATGGTTACTGCTAGCAAGTGTTATATTTGTGCCTATATTCCAGAAAATTCCTGGAGGCAGTCCTGTTCTTGGTTACTTGGCTGCTGGTATCTTGATTGGGCCTTATGGTCTCTCTATTATTCGTCATGTACATGGGACCAAAGCGATTGCAGAATTTGGAGTTGTTTTCTTGCTATTTAATATTGGTCTTGAGCTATCTGTTGAAAGGCTGAGTTCCATGAAGAAATATGTTTTTGGATTGGGCACTGCTCAGGTTTTGGTGACGGCGGTGGTGGTTGGCTTGGTTACTCATTTTATATCTGGGCAGCCTGGTCCTGCTGCAATTGTTATTGGGAATGGCCTGGCATTATCCTCTACTGCTGTTGTCCTCCAGGTGCTGCAGGAGCGAGGGGAGAGCACCTCACGTCATGGACGTGCTACATTTTCTGTCTTGCTTTTCCAGGATTTGGCTGTTGTGGTTCTTCTAATACTCATACCTCTGATTTCACCAAATTCATCTAAAGGAGGGATTGGTTTTCAAGCCATTGCTGAAGCTCTCGGACTGGCTGCTGTTAAGGCATTAGTTGCCATTGCTGCCATAATTGCTGGTGGACGCTTGCTACTTAGACCAATTTATAAGCAAATTGCTGAAAATCAAAATGCAGAGATATTTTCTGCCAATACACTTCTTGTTATCTTGGGGACTAGTCTCCTTACAGCCAGGGCAGGCCTTTCCATGGCATTGGGAGCATTTTTGGCTGGTTTGCTTCTTGCAGAAACTGAATTTTCCTTACAGGTTGAATCAGATATTGCTCCATATCGTGGCCTTTTATTGGGTCTCTTCTTCATGACGGTGGGAATGTCTATTGATCCAAAGCTTCTTATTTCAAACTTTCCAGTTATAATGGGGACATTAGGACTCTTAATTGGTGGCAAGGCTTTATTGGTTGCTTTAGTTGGCAAACTTTTTGGCATTTCAATCATATCTGCAATAAGAGTTGGTCTTCTTCTTGCTCCGGGGGGAGAATTTGCTTTTGTGGCTTTTGGTGAAGCCGTTAATCAGGGCATAATGTCTCCTCAGCTATCATCTTTGCTGTTTCTTGTGGTGGGAATTTCTATGGCCCTGACCCCATGGTTAGCTGCTGGAGGACAATTAATTGCGTCTCGTTTTGAGCAGCATGATGTGCGAAGTTTGTTACCTGTTGAGAGTGAGACAGATGATTTGCAAGATCATATTATCATTTGTGGATTTGGACGTGTTGGACAGATCATTGCTCAGCTTCTCTCAGAACGACTAATTCCATTTGTTGCACTTGATGTGAGGAGTGATCGAGTTGCAATGGGGCGTGCCCTCGACCTTCCTGTTTATTTTGGAGATGCTGGTAGTCGAGAGGTTCTCCACAAAGTTGGTGCTGAAAGAGCATGTGCTGCTGCAATAACTCTAGATACTCCTGGTGCAAACTATAGAACTGTTTGGGCCCTGAGCAAGTATTTTCCCAATGTGAAAACATTTGTCCGTGCTCATGATGTTGATCATGGCCTTAATTTGGAAAAGGCTGGGGCAACAGCGGTTGTTCCAGAGACCTTGGAACCAAGTCTGCAGTTAGCTGCTGCTGTTCTTGCACAGGCGAAATTGCCCACATCAGAGATTGCAGCTACAATCAACGAGTTCAGATCCCGCCACCTCTCCGAGCTCACTGAGCTATGTGAAGCAAGCGGAAGCTCCCTTGGCTATGGATTCTCTCGGATCGCGAGTAAATCCAAACCTCAACCCCCTGATTCTTCGGATGAGAACCAGATCACCGAGGGAACATTAGCTGTATGA 3624 0.4236 MDFACSFRQPNVFLNGEGTSYKTLDRFYSRFRFRSPGFNNNSIGNPKLISRAYPNKKMKKMIAFSGFNMTRVFKQEFEGKNLRRSLIYDFNIALSCSRAKCQSNDSLAYIDGNGRNVEFLESHDESSIAGPDDGDQLNRLGEGEGEGEVVEALSLDELREVLQKAIKELEVASLNSTMFEDKAQKISEAAIALQDEAAIAWNDVNSVLNTIQEIVNEECIAKEAVQKATMALSLAEARLQVAKESLEAAKIVSISPESSRESDSEDESRMEGFSSLRKEEEAFLVAQEDIRHCKATLLSCEAELKRLQCRKEELQKEVDKLNEKAEKTQMDALKAEEEVANIMLLAEQAVAFELEATQHVNDAEIAIQKVEKSLSNSQVETPETTQGPVFSDETLVEEEKASQGISGDVSVERERDMPTEGVSFLSESLSDSQPFEELKQYDDLSDQENGKLSLESPKEPEAETEKSKTGVQTKKQETQKDLTRDSSMLNAPKILLKKSSRFFSASFFSFTVDGTDLMESARRQFPKLVVGMLLLGAGVTFYSNRAERSSLVLHQPDVITTSIEEVSSNAKPLVRQIRKLPKRIKKLIAMLPHQEMNEEEASLFDMLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGTAQVLVTAVVVGLVTHFISGQPGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGLAAVKALVAIAAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLISNFPVIMGTLGLLIGGKALLVALVGKLFGISIISAIRVGLLLAPGGEFAFVAFGEAVNQGIMSPQLSSLLFLVVGISMALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAMGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTSEIAATINEFRSRHLSELTELCEASGSSLGYGFSRIASKSKPQPPDSSDENQITEGTLAV* 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1188 1207 Gene3D - 1007 1171 - -
Vvi15g1188 1207 MobiDBLite consensus disorder prediction 1182 1207 - -
Vvi15g1188 1207 Coils Coil 297 338 - -
Vvi15g1188 1207 MobiDBLite consensus disorder prediction 436 482 - -
Vvi15g1188 1207 Pfam Sodium/hydrogen exchanger family 609 979 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vvi15g1188 1207 Coils Coil 155 175 - -
Vvi15g1188 1207 MobiDBLite consensus disorder prediction 1187 1207 - -
Vvi15g1188 1207 NCBIfam monovalent cation:proton antiporter-2 (CPA2) family protein 610 890 IPR004771 GO:0006812|GO:0008324|GO:0016020
Vvi15g1188 1207 ProSiteProfiles RCK N-terminal domain profile. 1011 1133 IPR003148 GO:0006813
Vvi15g1188 1207 Pfam TrkA-N domain 1012 1125 IPR003148 GO:0006813
Vvi15g1188 1207 Coils Coil 360 380 - -
Vvi15g1188 1207 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1008 1149 IPR036291 -
Vvi15g1188 1207 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 189 352 - -
Vvi15g1188 1207 MobiDBLite consensus disorder prediction 253 273 - -
Vvi15g1188 1207 FunFam K(+) efflux antiporter 2 chloroplastic 599 985 - -
Vvi15g1188 1207 MobiDBLite consensus disorder prediction 396 485 - -
Vvi15g1188 1207 Gene3D - 599 987 IPR038770 -
Vvi15g1188 1207 MobiDBLite consensus disorder prediction 259 273 - -
Vvi15g1188 1207 FunFam K(+) efflux antiporter 2 chloroplastic 1007 1171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1188 Vvi-Chr15 19991736 20009588 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1188 1 1207 Inorganic Solute Cotransporters AT4G00630 69.845 0.0 1509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1188 - - vvi:100244810 2158.64