Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1187 ATGGCATTCACTGGAACCTTGGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTGGACTTGTTGTCTGCAGATGGAGCATCTTATCATAAAACATGCTTCAAATGCAGCCATTGCAAAGGCACCCTTGTGATGAGCAACTACTCATCCATGGATGGGGTCCTCTACTGCAAACCTCATTTTGAGCAGCTGTTCAAGGAGTCTGGCAATTTCAGCAAGAATTTTCAAACATCTGCGAAGCCTGCTGACAAGCTAAATGAGCTGTCAAGGGCTCCTAGCAAACTCTCTTCTATGTTCTCCGGAACCCAAGACAAATGCTCTGCTTGTCGAAAGACAGTGTACCCATTGGAGAAGGTGACGCTAGAGGGAGAATCTTACCACAAGTCATGCTTCAAGTGTGCTCATGGGGGCTGTCCCCTCACACATTCATCCTATGCTGCTTTGAATGGAGTCCTCTACTGCAAGCACCATTTTTCCCAGCTCTTCATGGAGAAAGGCAATTACAGCCATGTTCTTGAGGCTGCAACACACAAGAAACAAGCTGCTTCAAATGCAGAGGCAGAAGCAAAAGCAGAAGCAGAAACAAAAGCAGAAGCAGAAGGAGAAGCAGAAGCAGAGCCAGAACATGACCAAACTGACCAGACACAAGGGCAATCCTAA 663 0.463 MAFTGTLDKCKACDKTVYVVDLLSADGASYHKTCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKESGNFSKNFQTSAKPADKLNELSRAPSKLSSMFSGTQDKCSACRKTVYPLEKVTLEGESYHKSCFKCAHGGCPLTHSSYAALNGVLYCKHHFSQLFMEKGNYSHVLEAATHKKQAASNAEAEAKAEAETKAEAEGEAEAEPEHDQTDQTQGQS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1187 220 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 2 35 - -
Vvi15g1187 220 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Vvi15g1187 220 PANTHER OS06G0237300 PROTEIN 6 106 - -
Vvi15g1187 220 Pfam LIM domain 107 162 IPR001781 -
Vvi15g1187 220 Pfam LIM domain 10 65 IPR001781 -
Vvi15g1187 220 MobiDBLite consensus disorder prediction 184 212 - -
Vvi15g1187 220 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 99 132 - -
Vvi15g1187 220 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vvi15g1187 220 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 133 172 - -
Vvi15g1187 220 FunFam LIM domain and actin-binding 1 4 74 - -
Vvi15g1187 220 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vvi15g1187 220 Gene3D Cysteine Rich Protein 6 74 - -
Vvi15g1187 220 Gene3D Cysteine Rich Protein 101 171 - -
Vvi15g1187 220 MobiDBLite consensus disorder prediction 178 220 - -
Vvi15g1187 220 CDD LIM1_SF3 6 68 - -
Vvi15g1187 220 FunFam LIM domain and actin-binding 1 101 171 - -
Vvi15g1187 220 Coils Coil 173 203 - -
Vvi15g1187 220 ProSiteProfiles LIM domain profile. 105 165 IPR001781 -
Vvi15g1187 220 SMART lim_4 9 61 IPR001781 -
Vvi15g1187 220 SMART lim_4 106 158 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1187 Vvi-Chr15 19987368 19988898 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vvi15g1187 LIM 1.9e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1187 - K09377 vvi:100267125 412.92