Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1169 ATGCATGCGCGAGGAAGGTACCCACCCGGCATACACGGTGGTGGCCGTGGCGGCGGAATGGGGACCGGAAACCCTAGCGGCCCCAATCCTAATTTTCAGTATCGGAACCCTAACCAGCAACAGTACGTTCAAAGGAATGTAGGGCAGAGTTACCAGCAGTTTCAGCAGCAGAATCAGCAGCAGTGGTTGAGGAGGAATCAGGCAGGGGCTGATTCGGCTGTGGATGAAGTGGAGAAGACTGTGCAGTCGGAGGCCGTCGATTCGAGTTCACAAGATTGGAAGGCACGGCTAAAGATACCACCACCTGATACACGCTACAGGACAGAGGATGTAACGGCCACTAAGGGAAATGAATTTGAGGATTATTTTCTGAAACGTGAGCTGCTTATGGGCATATATGAGAAGGGATTTGAAAGACCATCTCCCATTCAGGAAGAGAGTATTCCAATTGCTCTAACTGGAAGCGATATTCTTGCTAGAGCTAAAAATGGAACTGGAAAAACAGCAGCATTTTGCATTCCTGCCTTGGAAAAAATTGATCAAGATAACAATGTGATTCAAGTTGTTATACTTGTTCCAACACGAGAATTGGCTCTTCAAACATCACAAGTGTGTAAGGAGCTTGGGAAACATCTGAAAATCCAAGTGATGGTTACCACTGGTGGCACCAGCTTAAAAGATGATATCATGCGTTTATATCAACCAGTTCATTTGCTTGTAGGAACTCCTGGAAGAATACTAGATCTTTCGAAGAAGGGTGTGTGCATTTTGAAAGATTGTTCCATGCTTGTTATGGACGAGGCTGATAAGCTTTTGTCGCCAGAGTTTCAACCTTCGATAGAGCAACTGATTCATTTTATGCCCTTGAATCGTCAAATTTTGCTTTTTTCAGCTACCTTTCCAGTTACTGTTAAGGATTTTAAAGATAGATATCTCCAAAAACCTTATATTATTAACCTTATGGATGAGCTCACTCTCAAGGGTATTACTCAATATTATGCTTTTGTCGAAGAAAGACAGAAAGTTCACTGCCTAAATACTCTTTTCTCTAAGCTTCAAATCAACCAATCCATCATTTTCTGCAACTCGGTGAATCGAGTGGAACTGTTGGCCAAGAAGATTACAGAACTTGGCTATTCTTGCTTCTATATCCATGCAAAGATGCTGCAAGATCATCGCAATAGAGTATTTCATGACTTCCGTAATGGAGCGTGCAGAAATCTTGTCTGTACTGATCTCTTTACACGAGGGATAGATATCCAAGCCGTCAATGTTGTTATTAATTTTGATTTTCCTAAGAACTCAGAAACATATCTGCACAGAGTTGGTCGATCAGGAAGGTTTGGGCACCTTGGATTGGCTGTGAATTTGATCACCTATGAGGACCGGTTTAACTTGTATAGGATTGAGCAAGAACTTGGGACTGAAATAAAGCAAATTCCACCGCATATAGATCAGGCTATTTACTGTCGGTGA 1476 0.4262 MHARGRYPPGIHGGGRGGGMGTGNPSGPNPNFQYRNPNQQQYVQRNVGQSYQQFQQQNQQQWLRRNQAGADSAVDEVEKTVQSEAVDSSSQDWKARLKIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIHFMPLNRQILLFSATFPVTVKDFKDRYLQKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1169 491 SMART helicmild6 368 449 IPR001650 -
Vvi15g1169 491 CDD DEADc_DDX6 119 319 - -
Vvi15g1169 491 Gene3D - 322 491 IPR027417 -
Vvi15g1169 491 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 117 145 IPR014014 GO:0003724
Vvi15g1169 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 471 IPR027417 -
Vvi15g1169 491 SMART ultradead3 136 332 IPR014001 -
Vvi15g1169 491 FunFam ATP-dependent RNA helicase DDX6 98 321 - -
Vvi15g1169 491 Pfam DEAD/DEAH box helicase 142 306 IPR011545 GO:0003676|GO:0005524
Vvi15g1169 491 MobiDBLite consensus disorder prediction 82 101 - -
Vvi15g1169 491 FunFam ATP-dependent RNA helicase DDX6 322 491 - -
Vvi15g1169 491 CDD SF2_C_DEAD 329 458 - -
Vvi15g1169 491 Gene3D - 51 321 IPR027417 -
Vvi15g1169 491 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 54 490 - -
Vvi15g1169 491 MobiDBLite consensus disorder prediction 1 38 - -
Vvi15g1169 491 Pfam Helicase conserved C-terminal domain 343 449 IPR001650 -
Vvi15g1169 491 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 264 272 IPR000629 -
Vvi15g1169 491 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 148 318 IPR014001 -
Vvi15g1169 491 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 328 488 IPR001650 -
Vvi15g1169 491 MobiDBLite consensus disorder prediction 24 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1169 Vvi-Chr15 19786214 19802264 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1169 119 488 Eukaryotic Initiation Factors Gene Family AT3G19760 38.172 1.32e-93 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1169 K12614 - vvi:100251721 928.317