Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1168 ATGGGGAGAACACCTTGTTGTGATAAGAGGGGGTTGAAGAAAGGCCCGTGGACTCCTGAAGAAGATCAAATCCTTGTTGATTACATCAACAAGAATGGCCATGGAAGCTGGCGTTCTCTTCCTAAGAATGCAGGTCTCCTCCGCTGTGGGAAAAGTTGCAGACTCCGATGGACCAATTATCTTAGACCAGACATTAAGCGAGGACCCTTCACTACTGATGAAGAGAAGCTTGTTATACAGCTTCATGGCATCCTAGGAAACAGGTGGGCTGCCATTGCCTCTCAACTGCCCGGAAGGACCGATAATGAGATCAAGAACCTATGGAACACCCACTTGAAGAAGCGCCTGCTTGGAATGGGGCTTGACCCACAAACCCATGAGCCCTCGGCTACTTCCTGTGGGCCAATAGCAAAACCACCTTCGTCCCCTTCAACCCGGCACATGGCGCAATGGGAGAGTGCTAGACTAGAAGCGGAGGCTCGGCTCTCAAGGGAGTCATTACTGTCCAACCCACCACCACCACCTTTGGGAAGAAATAACGATTCGGACTATTTCCTACGCCTATGGAATTCTGAGGTTGGAGAATCATTCCGCAACAAGGGACAGAAACCTACATGTCAAAGCCCAGTTTCTCAGGCATCTTCATCAACAAAATGTGGCTCAGTTTCAGGCGTTACTACAATGGAGACATGCCCCACGGTGAGCAATAAAATTGAAGATACCCCTCAAAATGCAATGGCAGGATCAGATTGCTCAAGCACCAACGAGCTGGAGGATTCATCGGACACAGCATTACAGCTGCTGTTTGATTTCCCAGTTAATAATGACATGAGTTTTCTAGAAGGAAACCTCGACACCTATCCCACATTCCCTGCTATGTTGTCTGAAAGCTCCTTCATCTCCCTCTGA 909 0.4873 MGRTPCCDKRGLKKGPWTPEEDQILVDYINKNGHGSWRSLPKNAGLLRCGKSCRLRWTNYLRPDIKRGPFTTDEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLLGMGLDPQTHEPSATSCGPIAKPPSSPSTRHMAQWESARLEAEARLSRESLLSNPPPPPLGRNNDSDYFLRLWNSEVGESFRNKGQKPTCQSPVSQASSSTKCGSVSGVTTMETCPTVSNKIEDTPQNAMAGSDCSSTNELEDSSDTALQLLFDFPVNNDMSFLEGNLDTYPTFPAMLSESSFISL* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1168 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi15g1168 302 CDD SANT 69 112 IPR001005 -
Vvi15g1168 302 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi15g1168 302 CDD SANT 16 61 IPR001005 -
Vvi15g1168 302 SMART sant 66 114 IPR001005 -
Vvi15g1168 302 SMART sant 13 63 IPR001005 -
Vvi15g1168 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi15g1168 302 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi15g1168 302 FunFam Myb transcription factor 11 67 - -
Vvi15g1168 302 Gene3D - 11 67 - -
Vvi15g1168 302 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi15g1168 302 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vvi15g1168 302 Gene3D - 69 116 - -
Vvi15g1168 302 MobiDBLite consensus disorder prediction 121 182 - -
Vvi15g1168 302 MobiDBLite consensus disorder prediction 125 149 - -
Vvi15g1168 302 FunFam MYB transcription factor 69 116 - -
Vvi15g1168 302 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 255 - -
Vvi15g1168 302 MobiDBLite consensus disorder prediction 197 222 - -
Vvi15g1168 302 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1168 Vvi-Chr15 19778917 19781630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1168 1 293 MYB Transcription Factor Family AT3G61250 64.865 1.11e-130 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi15g1168 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1168 K09422 - vvi:100246583 613.994