Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1144 ATGGATCGAAGAGATGCTATGGCGATGCCTGGGTCAGGTTCTTATTATATGCAAAGAGGAATGGCTGGGTCCGGGTCCGGGTCTGGGCCGCAGCCTGGATTACATGGATCACCGGGAATTCGCTCATTATCTAATCCAAGCATGCCATTTCAGCCCAATATTGGAGGTGGTGGCTCTATGGGATCAACATTACCCGTGGAGCCTTCGTCTGTAATCTCCACTCATGGTGTTAATGTGGGTGCACCATCCACATTGTTGCCACCAAGTGAGCCTGTGAAGAGAAAAAGGGGAAGACCCCGAAAATATGGACCTGATGGGACTGTGTCATTGGCATTGTCTCCCTCATCCGCCACTTCTCCTGGGACACTAACCGCATCTACCCAGAAGCGGGGTAGAGGGCGGCCACCAGGAACTGGGAGGAAGCAGCAGCTAGCTTCTCTTGGTGAGTGGCTGTCTGGTTCGGCTGGGATGGGTTTTACTCCACATGTCATCACCGTTGCAGTAGGAGAAGATGTTGCAACGAAAATTATGTCATTTTCACAGCAGGGGCCAAGAGCTATATGCATCTTATCAGCAAATGGAGCTGTATCCACTGTGACCCTTCGTCAGCCTTCAACCTCTGGTGGCACCGTCACATATGAGGGACGTTTTGAGATACTATGTCTGTCAGGCTCTTATTTGCTAACTGATAATGGTGGCTCCCGCAACCGAACTGGTGGTCTAAGTGTCTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGTGGTGGAGTTGGAGGAATGCTTACAGCAGCAAGTCCTGTTCAGGTGATAGTTGGGAGCTTCATATGGGGCAATTCAAAGACAAAGAACAAGATGGGGGAAAGTGTGGAAGGTGCTGGGGATTCAGAACGTCAGACAGTTGATCATCCAATCACTACTCCCACTACTGTTCCAGCCAGTCAAAATCTTACTCCAGCCTCATCGATGGGTGTGTGGCCAGGTTCACGGCAGTTGGATATGCGAAATTCTCCTGTTGACATTGATTTGATGCGTGGCTGA 1038 0.5048 MDRRDAMAMPGSGSYYMQRGMAGSGSGSGPQPGLHGSPGIRSLSNPSMPFQPNIGGGGSMGSTLPVEPSSVISTHGVNVGAPSTLLPPSEPVKRKRGRPRKYGPDGTVSLALSPSSATSPGTLTASTQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHVITVAVGEDVATKIMSFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLLTDNGGSRNRTGGLSVSLASPDGRVIGGGVGGMLTAASPVQVIVGSFIWGNSKTKNKMGESVEGAGDSERQTVDHPITTPTTVPASQNLTPASSMGVWPGSRQLDMRNSPVDIDLMRG* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1144 345 MobiDBLite consensus disorder prediction 1 143 - -
Vvi15g1144 345 MobiDBLite consensus disorder prediction 282 345 - -
Vvi15g1144 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 159 276 - -
Vvi15g1144 345 FunFam AT-hook motif nuclear-localized protein 1-like 161 291 - -
Vvi15g1144 345 MobiDBLite consensus disorder prediction 299 324 - -
Vvi15g1144 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 63 308 IPR039605 GO:0003680
Vvi15g1144 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 161 274 IPR005175 -
Vvi15g1144 345 MobiDBLite consensus disorder prediction 38 80 - -
Vvi15g1144 345 ProSiteProfiles PPC domain profile profile. 155 296 IPR005175 -
Vvi15g1144 345 SMART AT_hook_2 93 105 IPR017956 GO:0003677
Vvi15g1144 345 SMART AT_hook_2 129 141 IPR017956 GO:0003677
Vvi15g1144 345 CDD DUF296 160 274 IPR005175 -
Vvi15g1144 345 Gene3D - 161 289 - -
Vvi15g1144 345 MobiDBLite consensus disorder prediction 109 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1144 Vvi-Chr15 19638156 19643258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1144 1 345 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 51.532 4.06e-94 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1144 - - vvi:100265498 634.024