Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1141 ATGGGGTGTCAGTGCTCAAAACTCGCACCATGTTGCTGGGATTCACAATTCAAGGGGTCGGTTCTTGAGGCTCCTGATGTTGATGCAGATAATGGGGAGAAGAGCGAGGTTGATTACTTGCCTGTATTCTGTGAATACACATTCGAGCAGCTTAAGAATGCCACATCTGGTTTTGCCGTAGAGAACATCGTGTCTGAGCATGGAGAAAAGGCTCCGAACGTTGTGTATAAAGGGAAGCTAGAGAACCAGAGGAGAATTGCTGTCAAGCGCTTTAACAGAGTGGCTTGGCCTGATGCCCGACAATTCTCGGAAGAAGCAAGAGCAGTTGGTCAGCTCCGCAACCATAGATTGGCAAATTTGCTTGGTTGTTGTTGTGAGGATAATGAAAGGTTGCTGGTGGCGGAATATATGCCCAATGAAACACTTGCAAAACACCTTTTCCATTGGGAAACTCAACCTATGAAATGGGCAATGCGGTTAAGGGTGGTTCTACATCTTGCCCAAGCTTTAGAATATTGTACAGGCAGAGGGCGTGCCCTTTACCATGACCTTAATGCTTATAGAATTTTGTTCGATGAGGATGGTAATCCTAGACTCTCTTGCTTTGGCCTGATGAAAAATAGTAGGGATGGAAAAAGTTATAGTACGAATCTGGCGTTTACTCCTCCTGAGTATTTGAGAACTGGAAGAGTAACACCAGAAAGTGTAATATATAGCTTCGGCACTCTTTTGCTTGACCTGCTCAGTGGAAAGCATATCCCTCCCAGCCATGCCCTTGATCTGATACGAGACAGGAATCTGCAGATGCTGACAGATTCCTGCTTGGAAGGACAGTTTACTAATGATGATGGAACTGAGTTAGTACGGTTAGCTTCCCGATGTTTACAATATGAACCTCGAGAACGGCCAAATCCGAAGTCATTGGTGGCTGCTTTGACTCCTCTTCAGAAGGAAACCGAGGTTCCTTCCCATGTATTAATGGGGATTCCGCACAGTGCTTCATTCTCTCCCCTATCCCCACTTGGTGAAGCTTGCTCAAGAATGGACTTGACTGCCATACATGAGATCCTAGAGAGTGTTGGGTACAAAGATGACGAAGGAATGACAAATGAGCTTTCGTTCCAAATGTGGACTGATCAAATGCAGGAGACATTAAATTCTAAGAAAAAAGGTGATGCTGCTTTCCGGCAAAAGGATTTCAGAGCTGCCATTGACTGTTATACACAGTTCATTGATGTTGGAACCATGGTTTCTCCAACGGTTTGTGCACGCCGTAGCTTGTGTTATCTCATGAGTGACATGCCTCAAGAAGCTCTCAACGATGCAATGCAAGCCCAAGTCATTTCCCCAGTATGGCACATCGCGTCATATCTGCAAGCTGCTGCCCTTACGGGACTTGGAATGGAAAATGAAGCACAAGCTGCCCTCAAGGACGGTACCACTCTTGAAGCCCAGAGGAACACCCCTTCTGGACAAAAGTGA 1482 0.4595 MGCQCSKLAPCCWDSQFKGSVLEAPDVDADNGEKSEVDYLPVFCEYTFEQLKNATSGFAVENIVSEHGEKAPNVVYKGKLENQRRIAVKRFNRVAWPDARQFSEEARAVGQLRNHRLANLLGCCCEDNERLLVAEYMPNETLAKHLFHWETQPMKWAMRLRVVLHLAQALEYCTGRGRALYHDLNAYRILFDEDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFTNDDGTELVRLASRCLQYEPRERPNPKSLVAALTPLQKETEVPSHVLMGIPHSASFSPLSPLGEACSRMDLTAIHEILESVGYKDDEGMTNELSFQMWTDQMQETLNSKKKGDAAFRQKDFRAAIDCYTQFIDVGTMVSPTVCARRSLCYLMSDMPQEALNDAMQAQVISPVWHIASYLQAAALTGLGMENEAQAALKDGTTLEAQRNTPSGQK* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1141 493 FunFam probable serine/threonine-protein kinase At5g41260 138 329 - -
Vvi15g1141 493 Gene3D Phosphorylase Kinase; domain 1 33 136 - -
Vvi15g1141 493 FunFam probable serine/threonine-protein kinase At4g35230 33 136 - -
Vvi15g1141 493 Gene3D Tetratricopeptide repeat domain 382 491 IPR011990 GO:0005515
Vvi15g1141 493 ProSiteProfiles Protein kinase domain profile. 61 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g1141 493 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 24 487 IPR045845 GO:0004672|GO:0009742
Vvi15g1141 493 FunFam probable serine/threonine-protein kinase At4g35230 382 490 - -
Vvi15g1141 493 SUPERFAMILY TPR-like 388 481 IPR011990 GO:0005515
Vvi15g1141 493 SUPERFAMILY Protein kinase-like (PK-like) 35 322 IPR011009 -
Vvi15g1141 493 Gene3D Transferase(Phosphotransferase) domain 1 138 330 - -
Vvi15g1141 493 Pfam Protein tyrosine and serine/threonine kinase 74 311 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1141 Vvi-Chr15 19605704 19611166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1141 46 340 Receptor kinase-like Gene Family AT3G58690 31.677 2.04e-39 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vvi15g1141 PK_Tyr_Ser-Thr 8.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1141 K14500 - vvi:100249852 1008.44