Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1136 ATGGCACCTGAGGTTTATCGCCGAGAATCATATGGGAAGAGTATTGATGTCTTCTCCTTTGCTGTAATAGTACATGAGATGTTCCATGGGAAAACATCAAAGAGAGCAGAAAACCCAGAGTATGTTGCAGACAAGCAAGCATATGAAGATTCCCGGCCTCCTCTCTCCTCATATGTATACCCTAGACCCATCAAGACGCTTCTCAGAAACTGCTGGCACAAGAATCCAGAAGTGCGGCCTACATTTGAAGCCATAATTTTGGAGCTAGAGGAAATACAAGTGAGTATGCTAGATAAGAAAGCAGCTTGCCATGATTATCAATCACATGAATACCATGTAAATGGTTATGTATTCTTCATAATGGTTACACTATTATATCTCTACGAGCCTGCTTGGCGTCTCTTGAAACCGAACATAGCACAAATGAAGATGTATGACATCAAATTAGTAGTTATGCTAGCTAAGACAGAAACCTTGGGTGCCAGCTATAAACTTCATGTGCTAGGTATGAAAGTTAGGATGCAACCACAAACCATGGATTCAGAAGGACCATATCAGCTTCTCCACTGCTCTAGTAAGGGTGACAAAGAAGGTGTAATACAAGAATTGGAGAAAGGAGTTGATGCCAATCTAGCTGACTATGATAAAAGAACAGCACTCCATTTAGCAGCCTGTGAAGGCTGCGAAGAAATTGTTGTTCTCCTTCTTGAGAAAGGAGCTGATGTGAACTCCATCGATCGCTGGGGACGCACTCCACTTTCAGATGCTCGCAGCTTTGGTCATGAGAAGATATGCAAGATACTGGAGGCGCAGGGTTTTCATGTCTTACAAACATACAAAACACACATATCTGAGGCCTCTTTTCACTATATGCAACGGACTCCATGCTACGAAATTGATCACACCGAGGTGGACATGGATGAAGCAACTCTTATCGGAGAAGGAGCATATGGTGAAGTTTATTTAGTGAAGTGGCGTGGAACAGAAGTTGCTGCAAAGACAATCCGTTCCTCCATTGCATCGGATCCAAGGGTGAAGAATACCTTTTTGAGGGAACTAGGTTTATGGCAGAAACTGCGCCACCCTAATATAGTACAGTTCCTTGGTGTTCTAAAGCACTCTGAGCGCCTTATTTTCCTCACTGAGTATCTTCGAAATGGAAGTTTGTATGATATTTTGAGAAAGAAAGGAAGACTTGATCCACCAGTAGCTGTTGCCTATGCTTTAGATATTGCAAGAGGGATGAATTATCTTCACCAGCATAAACCACATGCTATAATTCACCGGGATTTAACTCCAAGAAATGTGTTACAAGATGAAGCAGGACGCCTTAAGGTTACAGACTTCGGTTTAAGCAAAATTGCTCAGGAAAAAGATGCAGTTGGTTACAAAATGACTGGAGGAACAGGTTCATATCGTTACATGGCACCTGAGGTTTATCGCCGAGAATCATATGGGAAGAGTATTGATGTCTTCTCCTTTGCACTAATAGTACATGAGATGTTCCAAGGGGGGCCATCAAATAGAGCAGAGAACGCAGAATATGTTGCAGATAAGCGAGCATATGAAGACTCACGGCCACCTCTCTCCTCATTTGTATACCCCGAACCTATCAAGACGTGA 1623 0.4264 MAPEVYRRESYGKSIDVFSFAVIVHEMFHGKTSKRAENPEYVADKQAYEDSRPPLSSYVYPRPIKTLLRNCWHKNPEVRPTFEAIILELEEIQVSMLDKKAACHDYQSHEYHVNGYVFFIMVTLLYLYEPAWRLLKPNIAQMKMYDIKLVVMLAKTETLGASYKLHVLGMKVRMQPQTMDSEGPYQLLHCSSKGDKEGVIQELEKGVDANLADYDKRTALHLAACEGCEEIVVLLLEKGADVNSIDRWGRTPLSDARSFGHEKICKILEAQGFHVLQTYKTHISEASFHYMQRTPCYEIDHTEVDMDEATLIGEGAYGEVYLVKWRGTEVAAKTIRSSIASDPRVKNTFLRELGLWQKLRHPNIVQFLGVLKHSERLIFLTEYLRNGSLYDILRKKGRLDPPVAVAYALDIARGMNYLHQHKPHAIIHRDLTPRNVLQDEAGRLKVTDFGLSKIAQEKDAVGYKMTGGTGSYRYMAPEVYRRESYGKSIDVFSFALIVHEMFQGGPSNRAENAEYVADKRAYEDSRPPLSSFVYPEPIKT* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1136 540 SUPERFAMILY Protein kinase-like (PK-like) 296 535 IPR011009 -
Vvi15g1136 540 SUPERFAMILY Protein kinase-like (PK-like) 1 123 IPR011009 -
Vvi15g1136 540 Pfam Ankyrin repeats (3 copies) 190 274 IPR002110 GO:0005515
Vvi15g1136 540 ProSiteProfiles Ankyrin repeat region circular profile. 215 247 - -
Vvi15g1136 540 SMART ANK_2a 215 244 IPR002110 GO:0005515
Vvi15g1136 540 SMART ANK_2a 248 277 IPR002110 GO:0005515
Vvi15g1136 540 SMART ANK_2a 182 211 IPR002110 GO:0005515
Vvi15g1136 540 FunFam Predicted protein 177 286 - -
Vvi15g1136 540 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 96 - -
Vvi15g1136 540 Pfam Protein tyrosine and serine/threonine kinase 1 88 IPR001245 GO:0004672|GO:0006468
Vvi15g1136 540 ProSiteProfiles Protein kinase domain profile. 1 92 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g1136 540 FunFam - 294 539 - -
Vvi15g1136 540 ProSiteProfiles Ankyrin repeat profile. 215 247 IPR002110 GO:0005515
Vvi15g1136 540 FunFam serine/threonine-protein kinase STY46-like 299 385 - -
Vvi15g1136 540 ProSiteProfiles Protein kinase domain profile. 306 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g1136 540 SUPERFAMILY Ankyrin repeat 178 277 IPR036770 -
Vvi15g1136 540 Pfam Protein kinase domain 309 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g1136 540 Gene3D Transferase(Phosphotransferase) domain 1 1 114 - -
Vvi15g1136 540 ProSitePatterns Protein kinases ATP-binding region signature. 312 333 IPR017441 GO:0005524
Vvi15g1136 540 Gene3D Transferase(Phosphotransferase) domain 1 294 539 - -
Vvi15g1136 540 Gene3D - 176 293 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1136 Vvi-Chr15 19576430 19587223 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1136 1 96 MAP Kinase Kinase Kinase AT1G14000 35.417 1.76e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vvi15g1136 Pkinase 3.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1136 - - vvi:104881914 692.575