Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1135 ATGGACTCAGAAGGACCGTATCGGCTTCTCCACTGCTCTAGTAAGTGTGATAAGGCAGGTGTGATACAAGAGTTGGAGAAAGGAGTAGAAGCCAACCTGGCTGACTATGATAAAAGAACAGCACTCCATTTAGCAGCCTGTGAAGGCTGTGAAGAAATTGTTGTCTTACTTCTTGAGAAAGGAGCTGATGCAAACCCCATTGATCGTTGGGGTCGCACTCCACTTTCAGATGCTCATAGCTTTGGTCATGAGAAGATATGTGAGATACTGGAGGCTCAGGGTGGAATAGATCCGGTATATACATTTTTAACGTGTAATAATGTGGGGCTTGACTCTAAGATTCCATGCTATGAAATTGATTATGCTGAGGTGGACATGGATGAAGCAACTCTTATTGGAGAAGGAGCATATGGTGAAGTTTATTTAGTGAGGTGGCGTGAAACAGAAGTTGCTGCAAATATAATTTATTCCTCCATTTCATCAGATCCAAGGGTGAAGAATACCTTTTTGAGGGAACTAGGTTTATGGCAGAAGCTGTGCCACCCTAATATAGTGCAGTTCCTTGGTTTTACAAAGCACTCTGATCGCCTTATTTTCGTCACTGAGTATCTTCGAAATGGAAGTTTGTATGATATTTTGAGCAAGAAAGGAAGACTTGATCCACCTGTAGTTGTGGCCTATGCTTTAGATATTGCAAGAGGGATGAATCATCTTCACCAGCTTAAACCACATTCTATAATTCACCGGGATTTGACTCCAAGAAATGTGTTACAAGATGAAGCAGGGCACCTTAAGGTTACAGTCTCCAGTCTATGCAAAATTGCTCAGGAAAAAGATGCAGTTGGTTACAAAATGACTGGAGGAACAGGTTCATGTAAGATTTTCCATCTTACTGAAAGTCAAACATTTTTTTGA 915 0.412 MDSEGPYRLLHCSSKCDKAGVIQELEKGVEANLADYDKRTALHLAACEGCEEIVVLLLEKGADANPIDRWGRTPLSDAHSFGHEKICEILEAQGGIDPVYTFLTCNNVGLDSKIPCYEIDYAEVDMDEATLIGEGAYGEVYLVRWRETEVAANIIYSSISSDPRVKNTFLRELGLWQKLCHPNIVQFLGFTKHSDRLIFVTEYLRNGSLYDILSKKGRLDPPVVVAYALDIARGMNHLHQLKPHSIIHRDLTPRNVLQDEAGHLKVTVSSLCKIAQEKDAVGYKMTGGTGSCKIFHLTESQTFF* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1135 304 Pfam Protein kinase domain 129 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g1135 304 SUPERFAMILY Protein kinase-like (PK-like) 126 276 IPR011009 -
Vvi15g1135 304 FunFam serine/threonine-protein kinase STY46-like 119 205 - -
Vvi15g1135 304 SUPERFAMILY Ankyrin repeat 4 94 IPR036770 -
Vvi15g1135 304 ProSiteProfiles Ankyrin repeat profile. 37 69 IPR002110 GO:0005515
Vvi15g1135 304 Gene3D - 2 93 IPR036770 -
Vvi15g1135 304 ProSiteProfiles Ankyrin repeat region circular profile. 37 69 - -
Vvi15g1135 304 PIRSF ILK 2 294 - -
Vvi15g1135 304 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 93 292 - -
Vvi15g1135 304 ProSiteProfiles Protein kinase domain profile. 126 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g1135 304 Gene3D Transferase(Phosphotransferase) domain 1 107 294 - -
Vvi15g1135 304 Pfam Ankyrin repeats (3 copies) 20 98 IPR002110 GO:0005515
Vvi15g1135 304 SMART ANK_2a 37 66 IPR002110 GO:0005515
Vvi15g1135 304 SMART ANK_2a 70 100 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1135 Vvi-Chr15 19572127 19576382 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1135 4 278 MAP Kinase Kinase Kinase AT4G18950 41.007 4.93e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vvi15g1135 Pkinase 1.8e-28 CL0016