Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1130 ATGGCAGAAGGCACTGTTACCTTCTTTGCGGAGAAGTTGAGCAACTTGATTTTACAGGAAGCTTCTGTATTTGGGCAAGTAGAAGGTCAGATAAAGCTGCTGCGCAACGAGCTCGAGTGGATGCGCCTCTTCCTGAAGGATGCGGATTCAAAGCGCATATACGACGAAAGAATCAAGCTGTGGGTGAATCAGATTAGAAACGCAACCCATGATGCTGAAGATGTCATCGACGAATTCATCCTCAACATGGATCATCGCCAGCGAAGACTCAACACCCTCAAGTTCCTCAAGTGCCTACCTGCTTGCGTAGGATTCGCCGACAAGTTACCCTTCATCCACGAGCTTGACAGTCGTGTGAAAGATATAAATGTGATGATTGGAGCGATTATGGCTAATAGATCCAAGTATGGTCTTGGAGATCTAGTGGCTTCCAGCTCATCCACGACTGATCAGGTTGCGGCGCACAAGGAGAAGCGGCCCCCAGTTGTTGAAGAGAGCGATGTAGTGGGGATCGAAGATGGCATCGAAGAGGTGAAGCAGATGCTGATGAAGGAAGAGACGCGGAGATCAGTGGTGTCCATCGTGGGGATGGGCGGCCTAGGCAAGACAACTTTCGCCAAGAAAGTTTATAATCAAAGGGATGTCCAACAACACTTTGATTGTAAAGCTTGGGTTTATGTGTCTCAAGAGTTCAGAGCAAGAGAAATTTTGCTCGATATTGCCAATCATTTTATGTCTCTCAGTGAAAAAGAAAAAGAGATGAGAGAGAGTGAGCTTGGCGAGAAGCTTTGTGAATACCTGAAGGAGAAGAAGTACTTGATAGTCATGGATGATGTATGGAGCAGTGAAGTTTGGAGTCGCTTGCGCTCACATCTTCCTGAGGCCAAGGATGGGAGCAAAGTTTTGATCACTACTCGTAATAAAGAAATCGCTCTGCAGGCCACTTCACAAGCATTTATCTATGAACTTCGTCTCATGAATGATGATGAGAGTTGGCAGCTTTTTCTCAAAAAAACTTTTCAAGGAACAAGCACACCTCATACTCTAAGTAGGGAGTTAGAGGAACCGGGAAAGAAAATTGTGGCAAAATGCAAAGGTTTGCCTCTTGCGGTTGTGGTCTTAGGAGGCTTACTGTCCACAAAAGAGAAGACAAAACCATCATGGGAGAAAGTGCTTGCAAGTATTGAGTGGTATCTGGATCAAGGCCCTGAATCGTGCATGGGAATTCTTGCTTTAAGTTACAATGACTTGCCCTATTACTTGAAGTCTTGTTTTCTTTATTGTGGGATTTTTCCAGAGGATTCTGAGATTAAGGCAAGTAAGTTGATCCGTTTGTGGCTGGCTGAAGGCTTTATACAGAGAAGGGGAAAAGAAACACTGGAAGACATAGCCGAAGACTACATGCACGAGTTGATCCATAGAAGTTTGATTCAAGTGGCTAAACGAAGGGTAGATGGAGAAGTGGAGTCTTGTCGCATGCATGATCTCCTTCGAGACCTTGCTGTTTTAGAGGCCAAGGATGCAAATTTTTTTGAGGTACATGAAAACATTGATTTCACATTCCCTATTAGTGTTCGTCGGCTTGTCATTCATCAAAATCTCATGAAGAAGAACATTTCTCAATGCTTGCATAATTCACAACTCAGATCTTTGGTTTCATTTAGTGAAACTAAAGGAAAAAAAAGTTGGAGATATTTACAAGAGCATATTAAATTACTTACTGTTTTGGAGCTAGGAAATACAAATATGCTTCCAAGGGATATAGGAGAATTCATTCACTTGAAATGCTTGTGCATAAATGGATATGGTAGAGTAACGCTTCCATCGTCCATTTGTAGACTGGTTAATCTGCAGAGTCTTGACTTAGGAGATCAGTATGGCAGTATACCATATTCAATTTGGAAATTGCAGCAATTGAGACATCTAAATTGTTGGAATTGCAAGATTTCTGGCCAATCCAAAACAAGCAAGTGTGTGAATGGTTATTTGGGTGTGGAACAACTCACTAACCTTCAAACATTAGCCTTAACGGGGGGAGTTGGTTGGAGGGAGATGGCCTAG 2061 0.4299 MAEGTVTFFAEKLSNLILQEASVFGQVEGQIKLLRNELEWMRLFLKDADSKRIYDERIKLWVNQIRNATHDAEDVIDEFILNMDHRQRRLNTLKFLKCLPACVGFADKLPFIHELDSRVKDINVMIGAIMANRSKYGLGDLVASSSSTTDQVAAHKEKRPPVVEESDVVGIEDGIEEVKQMLMKEETRRSVVSIVGMGGLGKTTFAKKVYNQRDVQQHFDCKAWVYVSQEFRAREILLDIANHFMSLSEKEKEMRESELGEKLCEYLKEKKYLIVMDDVWSSEVWSRLRSHLPEAKDGSKVLITTRNKEIALQATSQAFIYELRLMNDDESWQLFLKKTFQGTSTPHTLSRELEEPGKKIVAKCKGLPLAVVVLGGLLSTKEKTKPSWEKVLASIEWYLDQGPESCMGILALSYNDLPYYLKSCFLYCGIFPEDSEIKASKLIRLWLAEGFIQRRGKETLEDIAEDYMHELIHRSLIQVAKRRVDGEVESCRMHDLLRDLAVLEAKDANFFEVHENIDFTFPISVRRLVIHQNLMKKNISQCLHNSQLRSLVSFSETKGKKSWRYLQEHIKLLTVLELGNTNMLPRDIGEFIHLKCLCINGYGRVTLPSSICRLVNLQSLDLGDQYGSIPYSIWKLQQLRHLNCWNCKISGQSKTSKCVNGYLGVEQLTNLQTLALTGGVGWREMA* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1130 686 Gene3D - 325 413 IPR042197 -
Vvi15g1130 686 PRINTS Disease resistance protein signature 266 280 - -
Vvi15g1130 686 PRINTS Disease resistance protein signature 364 378 - -
Vvi15g1130 686 PRINTS Disease resistance protein signature 568 584 - -
Vvi15g1130 686 PRINTS Disease resistance protein signature 191 206 - -
Vvi15g1130 686 Gene3D Ribonuclease Inhibitor 502 680 IPR032675 -
Vvi15g1130 686 SUPERFAMILY L domain-like 492 676 - -
Vvi15g1130 686 CDD RX-CC_like 2 129 IPR038005 -
Vvi15g1130 686 Pfam Rx N-terminal domain 6 93 IPR041118 -
Vvi15g1130 686 Gene3D - 146 319 IPR027417 -
Vvi15g1130 686 Pfam NB-ARC domain 172 414 IPR002182 GO:0043531
Vvi15g1130 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 428 IPR027417 -
Vvi15g1130 686 Gene3D - 5 115 - -
Vvi15g1130 686 FunFam Probable disease resistance protein At1g63360 414 503 - -
Vvi15g1130 686 PANTHER DISEASE RESISTANCE PROTEIN RP 35 676 IPR044974 GO:0006952
Vvi15g1130 686 Gene3D - 414 501 IPR036388 -
Vvi15g1130 686 FunFam Probable disease resistance protein At1g61300 150 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1130 Vvi-Chr15 19528135 19530195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1130 169 501 WRKY Transcription Factor Family AT5G45050 24.776 4.92e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1130 - - vvi:100855277 1321.22