LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi15g1125	ATGGCAGATACGGTTTCCATCTTTGTGGAGAAGTTGAGCAACTTGGTTTTACAAGAAGCCTTTCTGTTTGGACAAGTAGAAGAGCAGGTGAAGTTGCTGCGGGACGAGCTGAAATGGATGCGCCTCTTCTTGAAAGATGCGGATTCACAATCCTTGTGCAACGAAAAAATCAAGCTGTGGGTGGAGCAGATTAGGAACGTGACCCATGATGCTGAAGATGTCATCGATGAGTTTATCCTTGACATGGATCGCCGGCAGCTGAGACTCAACACCCTCAAGTTCCTCAAGTGCCTACCTACTTGCGTAGGATTTGCCGACAAGTTACCTTTCATCCACGAGCTCGACGGTCGTGTGAAAGAGATCAATATCAGGATTGAGAGGATTATGGCTAATAGATCCAAGTATGGCCTTGAAGCTCTAATGGCTTCCAACTCATCCAGTACTACTGATCAGGTTGTGGCGTACAAGGAGAAGTGGGCCCAAGTTGTCGAAGGGAGCGATGTAGTGGGGATTGAAGATGGCACCGAGGTGGTGACGCAGATGCTGACGAAGGGAGAGATGCGGAGAGCGGTAGTGTCCATCGTGGGGATGGGCGGCCTAGGCAAGACAACTCTTGCCAAGAAAGTTTATAATCATAGTGGTGTTAAGCGGCACTTTGATTGTATAGCTTGGGTTTGTGTCTCTCAAGAATTCAAGCCAAGGGAGCTTCTACTCAGCATCATCAGTTCTGTCATGTCCCTCAGCAATGAAGAAAAGAAAGAAATGAGAGAGGTCGAGCTAGGTGGGAAGCTTCGTGAATGCCTCAACGACAAGAAGTACCTGGTAGTCATGGATGATGTATGGAGTATTGAAGCTTGGAGTAGCTTGTGCTCCTATCTTCCTGAGTCTAGGAATGGCAGCAAAGTGCTGATGACCACCCGAAATAAAGAAATTGCTGCACAAGCCAATGGGCATGAAGTTGTTGGGCACACCGATTCGCAGGCTCTGGTCTATGAACTCCCGATTATGGATGATGATGAGAGTTGGGAGCTCTTTCTCAAGAAGACTTTTGGAGCGAGAGATAATACACATGTTCCTTCATCTAAAACATTGGAGGAATTGGGAAGGAAAATTGTGGCAAAATGTAATGGTTTGCCCCTTGCGATTGTGGTGTTAGGAGGCTTATTGTCGACGAAAGAGAGGACAGAACCATCATGGGAGAGAGTGCTTGAAAGTATAGATTGGCATCTGAATCGAGGCCCGGAGTCATGTTTTGGAATTCTGGCCTTAAGTTACAATGACTTGCCTTATTACTTGAAGTCATGTTTTCTTTACTGTGGTATTTTCCCAGAAGACTCTGAAATCAAGGCTAGTAAGTTGATTCACTTATGGATTGCTGAAGGTTTTGTTCAAAGAAGAGGCATAGAAAAGTTGGAAGACATTGCTGAAGATTATTTGTATGAACTGATCCACAGAAGCATGGTTCAGGTGGCTCGAAAGAAGGCAAATGGAAGAGTGATGTCTTGTCGCATACATGATCTCCTTCGGGACCTTGCTATTTCAGAGGCCAGAGATGCAAAACTTTTTGAGGTACATGAAAACATTGATTTCACCTTTCCTAATAGCATTCGTCGGTTAAGCATTCATCAACATCTCATCAAGAACAACATTTCTCAGCATTTGCATAATTCACTCAGATCTTTAATTTTCTTTACTGACCCTATTGAGAGAAAGGATTGGAGATCTATACAAAAGCACGTTAAATTGCTTGGTGTGTTGGATCTAGGGAGGATAGAGGAGGATTATATCCTCCCAAAGGAGATAGGAGAACTCATCCACTTGAAATTCTTATGCATAAAGGGATATTTTAATAGAGTAACGCTTCCATCATCCATTAAGAGACTTGTTAATCTGCAAAATCTCAATTTAGGATACAATGATTCCTACATACCTTGTACAATTTGGAAATTGCAGGAATTGAGACATCTAAATTGTTGTTATGGCGAGATGTCAAGTCAATTCAAATTAAATAAGTGCATGAATGGTTATTTGGGTGTGGAGCAACTCACCAATCTTCAAACATTAGCATTACCGGTAGGAAGTTGGTTGGAGGGGGATGGTTTAGGAAAACTTACCCAACTTAGGAAACTACGTTTAGTTGGACCGTTGGCTCCGTATTTGAAGAAGGGGTTTTTTGATTCTATTGCTGAATTGACAACTCTTCGGACCTTGTTTTTGGGGAATTGGCAGGTTGATAAGAAAAAGACATTATTAAATCGGGTTGGATTGAAGTGGCAGGAGAATGTTGTTGAAGAGAAAACATTGTTACCAGGACTCATGTCTTTCTCACGCCACACCTATCTCTATAAAGTGCACCTATATGGAAAGGTGGACAAGTTACCAGAGCAAACTGAATTCTACCCTCCCAACCTCCTCAAACTCACTTTGAGCAAATGTGAGCTAGAGGATGACCCAATGTTGATTCTAGAGAAGCTCCCAACCTTGAGAATTCTTGGATTATTGCGTGGCTCATATGTTGGAAAGAAAATGGTTTGTTCCTGTGGAGGATTTCTTCAACTCGAAAGCCTAGAACTGAATGGTTTAAATGAATTAGAAGAATTGACAGTTGAGGAAGGAGCAATGTGTAATCTGAGGACCCTACAGATTTTGTCTTGTGATAAAATGAAAAAATTTCCTCATGGATTGTTGCAGATGAAAAAACTTGAGAAATTGGGGCTGATCAGAACCAGCGGCAAATTAATTGAAGAGGTCCAGCAAACAGAGGGAGAGGAGTGGGATAGAATTCGTCTCATCACCTTCATAGACAAGTGA	2811	0.4265	MADTVSIFVEKLSNLVLQEAFLFGQVEEQVKLLRDELKWMRLFLKDADSQSLCNEKIKLWVEQIRNVTHDAEDVIDEFILDMDRRQLRLNTLKFLKCLPTCVGFADKLPFIHELDGRVKEINIRIERIMANRSKYGLEALMASNSSSTTDQVVAYKEKWAQVVEGSDVVGIEDGTEVVTQMLTKGEMRRAVVSIVGMGGLGKTTLAKKVYNHSGVKRHFDCIAWVCVSQEFKPRELLLSIISSVMSLSNEEKKEMREVELGGKLRECLNDKKYLVVMDDVWSIEAWSSLCSYLPESRNGSKVLMTTRNKEIAAQANGHEVVGHTDSQALVYELPIMDDDESWELFLKKTFGARDNTHVPSSKTLEELGRKIVAKCNGLPLAIVVLGGLLSTKERTEPSWERVLESIDWHLNRGPESCFGILALSYNDLPYYLKSCFLYCGIFPEDSEIKASKLIHLWIAEGFVQRRGIEKLEDIAEDYLYELIHRSMVQVARKKANGRVMSCRIHDLLRDLAISEARDAKLFEVHENIDFTFPNSIRRLSIHQHLIKNNISQHLHNSLRSLIFFTDPIERKDWRSIQKHVKLLGVLDLGRIEEDYILPKEIGELIHLKFLCIKGYFNRVTLPSSIKRLVNLQNLNLGYNDSYIPCTIWKLQELRHLNCCYGEMSSQFKLNKCMNGYLGVEQLTNLQTLALPVGSWLEGDGLGKLTQLRKLRLVGPLAPYLKKGFFDSIAELTTLRTLFLGNWQVDKKKTLLNRVGLKWQENVVEEKTLLPGLMSFSRHTYLYKVHLYGKVDKLPEQTEFYPPNLLKLTLSKCELEDDPMLILEKLPTLRILGLLRGSYVGKKMVCSCGGFLQLESLELNGLNELEELTVEEGAMCNLRTLQILSCDKMKKFPHGLLQMKKLEKLGLIRTSGKLIEEVQQTEGEEWDRIRLITFIDK*	937

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi15g1125	936	FunFam	Probable disease resistance protein At1g63360	425	514	-	-
	Vvi15g1125	936	Gene3D	Ribonuclease Inhibitor	698	922	IPR032675	-
	Vvi15g1125	936	CDD	RX-CC_like	5	128	IPR038005	-
	Vvi15g1125	936	Gene3D	-	425	511	IPR036388	-
	Vvi15g1125	936	FunFam	Probable disease resistance protein At5g66910	335	423	-	-
	Vvi15g1125	936	PRINTS	Disease resistance protein signature	375	389	-	-
	Vvi15g1125	936	PRINTS	Disease resistance protein signature	872	888	-	-
	Vvi15g1125	936	PRINTS	Disease resistance protein signature	191	206	-	-
	Vvi15g1125	936	PRINTS	Disease resistance protein signature	267	281	-	-
	Vvi15g1125	936	Pfam	Rx N-terminal domain	5	90	IPR041118	-
	Vvi15g1125	936	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	150	439	IPR027417	-
	Vvi15g1125	936	FunFam	Probable disease resistance protein At1g61300	152	319	-	-
	Vvi15g1125	936	Gene3D	-	335	424	IPR042197	-
	Vvi15g1125	936	Gene3D	-	150	321	IPR027417	-
	Vvi15g1125	936	PANTHER	DISEASE RESISTANCE PROTEIN RP	33	886	IPR044974	GO:0006952
	Vvi15g1125	936	Gene3D	-	4	114	-	-
	Vvi15g1125	936	SUPERFAMILY	L domain-like	503	907	-	-
	Vvi15g1125	936	Pfam	NB-ARC domain	175	410	IPR002182	GO:0043531
	Vvi15g1125	936	Gene3D	Ribonuclease Inhibitor	512	668	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi15g1125	Vvi-Chr15	19500365	19503175	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi15g1125	169	512	WRKY Transcription Factor Family	AT5G45050	22.543	2.36e-08	56.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi15g1125	-		-	vvi:100265369	1511.51