Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1119 ATGGGAAAAGCAAAGAAAGCCCAAAAATTTGCTGTCATGAAGAAGATGGTCACCTCCAAAGCACTTAAAAAACACAAAGAAGAGGTTTTGAACCCTACCAAGAAGGACGAAAACAAAGAGAAAACCTCCAGAAATGTGCCATATGTTCCGTCCGCTCTTTTCTTCAAGTACAACACTGCTTTGGGGCCGCCTTATCGGGTTTTGGTGGATACCAATTTCATCAATTTTTCTATTCAGAATAAACTTGATCTGGAGAAAGGGATGATGGACTGCTTATATGCAAAATGCACTCCTTGTATCACGGATTGTGTGATGGCAGAGCTTGAGAAGTTAGGTCAGAAATACCGCGTGGCTCTGAGGATTGCAAAGGATCCTCGGTTTGAAAGATTACTCTGTACTCATAAGGGAACTTATGCTGATGACTGTATTGTTGATAGAGTTACTCAGCATAAATGCTACATTGTTGCTACATGCGATCGAGACTTGAAGCGAAGGATTCGCAAGGTCCCTGGTGTGCCAATAATGTACATTACAAAACACCAGTATTCAATTGAGCGGTTGCCCGAAGCGACAATTGGTGGAGATTTTTCAGGAAAATCGTCACCGGACCTGTTTGGCAGGGTGAATAAGCTTGAAGATGGGGTGATGGCTCCAAAACAGCCAAATACTGGCCTCTTCGTGGGCCTAAACAAAGGACATGTGGTGACAAAGAAGGAACTCCCTCCACGCCCTTCTGATAGAAAGGGGAAAACCAGTAAAAGAGTTCACTTTGTGCGGAATATCATCAGGGAAGTAGCTGGTTTTGCTCCTTATGAGAAGAGAATCACTGAACTTCTTAAGGTTGGGAAAGACAAGCGAGCCTTGAAAGTTGCGAAGAGAAAGTTAGGCACACACAAGAGAGCAAAAAAGAAGCGTGAGGAGATGTCCAGTGTCCTACGCAAGATGAGGTCTGGTGGAGTTGGAGAGAAGAAGAAGTGA 978 0.4397 MGKAKKAQKFAVMKKMVTSKALKKHKEEVLNPTKKDENKEKTSRNVPYVPSALFFKYNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLLCTHKGTYADDCIVDRVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITKHQYSIERLPEATIGGDFSGKSSPDLFGRVNKLEDGVMAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVRNIIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSGGVGEKKK* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1119 325 SMART PIN_9 65 164 IPR002716 -
Vvi15g1119 325 MobiDBLite consensus disorder prediction 302 325 - -
Vvi15g1119 325 PANTHER UNCHARACTERIZED 6 274 - -
Vvi15g1119 325 Pfam Ribosomal protein L36e 223 316 IPR000509 GO:0003735|GO:0005840|GO:0006412
Vvi15g1119 325 Gene3D - 39 192 - -
Vvi15g1119 325 SUPERFAMILY PIN domain-like 63 187 IPR029060 -
Vvi15g1119 325 MobiDBLite consensus disorder prediction 292 325 - -
Vvi15g1119 325 Gene3D 60S ribosomal protein L36 214 320 IPR038097 -
Vvi15g1119 325 FunFam 60S ribosomal protein L36 216 321 - -
Vvi15g1119 325 CDD PIN_Fcf1-like 55 185 IPR037503 -
Vvi15g1119 325 ProSitePatterns Ribosomal protein L36e signature. 270 280 IPR000509 GO:0003735|GO:0005840|GO:0006412
Vvi15g1119 325 MobiDBLite consensus disorder prediction 21 43 - -
Vvi15g1119 325 FunFam rRNA-processing protein FCF1 homolog 49 191 - -
Vvi15g1119 325 Pfam Fcf1 90 186 IPR006984 GO:0032040
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1119 Vvi-Chr15 19419421 19429082 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1119 223 325 Cytoplasmic Ribosomal Protein Gene Family AT5G02450 86.667 1.69e-56 177