Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1114 ATGGCGACAGATATGCAGAAATTGATTGGGACAAGTGAAGATGAAGAAGAAGAAATGGAGATGGATGTGAAAGAAGAGGATGATGATGATGACGAAGATGAAGAGAAGCACATACCTGTGACAGGGATGGTATCTGTTGATGGAGCATTTGTATCAAGCAGTGGCAATAACCGTTTTCAACATCACCAGCAAATTCAAGAACAAGGAGGCAACCAAAGTGGAGGGCGAAGGTGTAGACCAGTAGAAGAAAAGGAGAGAACAAAGCTGAGAGAGCGGCACCGGAGAGCTATCACTGCAAGGATCTTGGCAGGCCTTCGAAGGCATGGAAACTATAACCTAAGGGTTAGAGCTGATATTAATGATGTGATTTCAGCTTTGGCGAGGGAAGCTGGCTGGGTTGTTCTTCCTGATGGAACCACCTTTCCTTCAAGAACTCAGGTCCCTAGGCCTGCTGGTGGCACCTCTACTGCAGTGGTGACTTCATCATCTTCACACTTGGTGCAGCAACAGACTCCACCTACTTCCCTTAGAGGAGTCTCTTCTGGTTATCGGAGCTCAGTGGAATACAATGCATCTCGCATGAAAGGTGTTTTTGTGCCTGCTTCATCTCCTTATGATGTATCCCCAAGCTCTAGGTCTCACTCTGCAGTTGTGATGGGAGATAGAGGAGGGCAAGCAGAGAATCATCCTCTTATTGGTGGCTCCATGGATGCTGTTGATGATAAGCAGGTGGTTGACATGCCGCCGAAGTTACAAGAGCGTGATTTTGCGGGCACCCCTTACATTCCTGTTTATGTGATGCTACCTCTGGGTGTCATCAGTATGAAGTGTGAGCTGGTTGATCCAGACGGTTTATTGAAGCAGCTAAGGATATTGAAATCAGTCAATGTTGATGGTGTTATGGTTGATTGCTGGTGGGGAATAGTAGAGGCACATGCTCCACAAGAGTATAACTGGAATGGTTACAAGAGGCTGTTTCAGATTGTGCGTGAGCTTAAACTTAAGCTACAAGTTGTATTGTCATTTCATGAATGTGGTGGCAATGTTGGTGATGATGTTTGCATTCCACTGCCCCATTGGGTGGCAGAAATCGGTCGAAGCAATCCTGACATCTTTTTCACCGATAGAGAGGGAAGACGCAACCCTGAATGTCTTTCTTGGGGAATTGATAAAGAACGGAACTTAAGGGGCCGGACTGCCGTTGAGGTTTACTTTGACTTCATGAGAAGCTTCCGTGTCGAATTTGATGACTTCTTTGAGGATGGTATCATCTCAATGATTGAAGTTGGACTTGGTCCATGCGGGGAGCTACGGTACCCATCTTATCCTGTAAAGCATGGTTGGAGATATCCTGGCATTGGTGAATTCCAGTGTTATGATCAGTATTTGTTGAAGAATTTGAGGAAGGCAGCCGAAGCAAGGGGGCATGCTTTTTGGGCTAGAGGCCCAGATAATGTAGGTTCCTATAATTCCCAGCCCCATGAAACTGGATTTTTTTGTGATGGGGGTGATTATGATGGCTATTACGCTAGATTCTTCCTTAATTGGTACTCTCAAGTTTTAGTTGATCATGGCGATCGGGTACTTTCTCTAGCCAAGCTAGCTTTTGAAGGCACTTCAATTGCTGCAAAGCTAGCAGGTGTTCACTGGTGGTACAAGACAACTAGTCATGCAGCGGAATTGATGGCAGGGTTTTACAATCCATGCAATCGTGATGGCTATGCTGCAGTAATGGCAATGTTGAAGAAGCACGGTGCTGCATTAAACTTCACATGCGCTGAATTACACATGTTAAACCGGCATGAGGACTTCCCAGAGGCAATGGCAGATCCTGAGGGGTTAGCCTGGCAAGTATTGAATGCTGCATGGGATGTCTGCATACCAGTTGTCAGTGAGAATGCTCTTCTTACCCATGATAGAGAAAGCTATAACAAGATATTAGAGAATGCCAAGCCTCTAAACGATCCAGATGGGAGGCATTTTTCATCGTTCACCTACCTTAGACTCAGCCCACTTCTCATGGAAAGACACAATTTTCTTGAATTTGAACGATTCGTCAAGAGAATGCATGGGGAAGCAGTTCTCGATCTCCAGTTATAG 2100 0.4557 MATDMQKLIGTSEDEEEEMEMDVKEEDDDDDEDEEKHIPVTGMVSVDGAFVSSSGNNRFQHHQQIQEQGGNQSGGRRCRPVEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVISALAREAGWVVLPDGTTFPSRTQVPRPAGGTSTAVVTSSSSHLVQQQTPPTSLRGVSSGYRSSVEYNASRMKGVFVPASSPYDVSPSSRSHSAVVMGDRGGQAENHPLIGGSMDAVDDKQVVDMPPKLQERDFAGTPYIPVYVMLPLGVISMKCELVDPDGLLKQLRILKSVNVDGVMVDCWWGIVEAHAPQEYNWNGYKRLFQIVRELKLKLQVVLSFHECGGNVGDDVCIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERNLRGRTAVEVYFDFMRSFRVEFDDFFEDGIISMIEVGLGPCGELRYPSYPVKHGWRYPGIGEFQCYDQYLLKNLRKAAEARGHAFWARGPDNVGSYNSQPHETGFFCDGGDYDGYYARFFLNWYSQVLVDHGDRVLSLAKLAFEGTSIAAKLAGVHWWYKTTSHAAELMAGFYNPCNRDGYAAVMAMLKKHGAALNFTCAELHMLNRHEDFPEAMADPEGLAWQVLNAAWDVCIPVVSENALLTHDRESYNKILENAKPLNDPDGRHFSSFTYLRLSPLLMERHNFLEFERFVKRMHGEAVLDLQL* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1114 699 Pfam Glycosyl hydrolase family 14 265 683 IPR001554 GO:0000272|GO:0016161
Vvi15g1114 699 Pfam BES1/BZR1 plant transcription factor, N-terminal 74 217 IPR008540 -
Vvi15g1114 699 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 339 360 IPR001554 GO:0000272|GO:0016161
Vvi15g1114 699 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 296 310 IPR001554 GO:0000272|GO:0016161
Vvi15g1114 699 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 539 555 IPR001554 GO:0000272|GO:0016161
Vvi15g1114 699 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 614 636 IPR001554 GO:0000272|GO:0016161
Vvi15g1114 699 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 317 335 IPR001554 GO:0000272|GO:0016161
Vvi15g1114 699 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 505 524 IPR001554 GO:0000272|GO:0016161
Vvi15g1114 699 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 574 597 IPR001554 GO:0000272|GO:0016161
Vvi15g1114 699 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 432 454 IPR001554 GO:0000272|GO:0016161
Vvi15g1114 699 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 556 567 IPR001554 GO:0000272|GO:0016161
Vvi15g1114 699 ProSitePatterns Beta-amylase active site 1. 343 351 IPR018238 GO:0000272|GO:0016161
Vvi15g1114 699 MobiDBLite consensus disorder prediction 77 91 - -
Vvi15g1114 699 MobiDBLite consensus disorder prediction 11 35 - -
Vvi15g1114 699 MobiDBLite consensus disorder prediction 1 41 - -
Vvi15g1114 699 MobiDBLite consensus disorder prediction 143 180 - -
Vvi15g1114 699 Gene3D Glycosidases 253 698 - -
Vvi15g1114 699 MobiDBLite consensus disorder prediction 60 91 - -
Vvi15g1114 699 FunFam Beta-amylase 253 699 - -
Vvi15g1114 699 PRINTS Plant beta-amylase signature 422 431 IPR001371 GO:0000272|GO:0016161
Vvi15g1114 699 PRINTS Plant beta-amylase signature 665 679 IPR001371 GO:0000272|GO:0016161
Vvi15g1114 699 PRINTS Plant beta-amylase signature 577 587 IPR001371 GO:0000272|GO:0016161
Vvi15g1114 699 PRINTS Plant beta-amylase signature 680 694 IPR001371 GO:0000272|GO:0016161
Vvi15g1114 699 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 201 692 IPR001554 GO:0000272|GO:0016161
Vvi15g1114 699 SUPERFAMILY (Trans)glycosidases 256 695 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1114 Vvi-Chr15 19389359 19399540 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1114 1 696 Glycoside Hydrolase AT2G45880 67.382 0.0 980
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vvi15g1114 Glyco_hydro_14 1.5e-106 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1114 K01177 - vvi:100246489 1382.08