Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1105 ATGGCTAATGGGGTCCAAAACCAGGAAGGGGTTCCAGAAAACCTAAGCAAACAGCTTGCTGTGGCTGTGAGGAGTATCCAGTGGAGCTATGCTATTTTCTGGTCATTGTCAACCAGGCAACAAGGGGTACTGGAATGGAGTGGGGGGTACTATAATGGGGACATTAAGACAAGGAAGACAGTCCAGGAAATGGAACTTAAAGCCGACAAAATGGGCTTACAGAGGAGTGAGCAATTGAGAGAGTTGTACGAGTCTCTCTTAGAAGGTGAAACCGACCAACAGTCCAAGAGGCCTTCTGCTGCATTGTCTCCAGAAGATCTCTCAGATGCAGAGTGGTATTACTTGGTTTGCATGTCCTTTGTATTCAATCCTGGCGAAGGTTTGCCAGGAAGAGCACTAGCAAATGGTCAATCCATCTGGCTTTGTGATGCTCAATATGCGGATAGCAAAGTTTTCTCTCGGTCTTTGCTAGCGAAGAGCGCGTCTATTCAGACAGTGGTATGTTTTCCTCATATGGGGGGTGTGATTGAGCTAGGCGTTACAGAGCTGGTCCCAGAGGATCCTAGTCTCATTCAACATATCAAAGCTTGTTTACTCGAGCTTTCAAAGCCTATCTGCTCTGAGAAATCTTCCTTTGTTCCTTGTAACACTGATGATGATAAAGACCGCATGTGTGCCAAGGTTGATCATGATATAGTTGAGACCATGGCTTTGGAGAAATTGTACCCCGCCACTGAAGAAATCAAGTTCGAACAGGAGGGGATGAGTGAATTGCACGGAAACATCCATGAAGAACATAACATTGGTTCTCCTGATGACTGTTCAAATGGTTGTGAGGATGATCACCAGACAGAGGACTCCTTCATGCTTGAAGGTATTAATGGAGGTGCTTCCCAAGTTCAGAGTTGGCATTTCGTGGACGATGATTTCAGCAATGGTGTTCAAGGTTCCATGGATTCTAGTGACTGTATATCACAAGCTTTTGTGAACCAAGAAAGGATTCACTCTTCCCCCAAGGGTGAAAATGTAAACAATGTTCGACTGAAAGACCTTCAAGAATGCAATGACACAAAATTTAGCTCCTTGGATCTTGGAGCTGATGATGATTTGCACTACAGAAGAACTATTTCTACTGTTCTCAGGAAGTCACACCCGTTGATTGGAAATTCATGTTTTCGCTGTTATGATATCAAATCTAGCTTTATAACCTGGAAGAAAGGAGGAATGCTTGATGCCCAAAAGCCACAAACACAACAAAGAATATTAAAGAAGATCTTGTTTACGGTCCCCTTGATGCATGGTGGTTGCGGTTTCAAGTCCCAAAAAGAAAATGCTGGAAGAGATGGGCTTTGGAAATCTGGAAGTGATGGCATCTGCAAGCAACATGCTTTATCAGATAAAAAAAGAGAGAAAGAGAAGTTTCTGGTTCTCAGGTCAATGGTTCCTTCTATCAACAAGATCGATGAAGTATCAATTCTCGGTGACACAATAGAGTACCTGAAAAAGCTTGAGGCAAGAGTAGAAGAGTTGGAAACTAGTATGGACTTGCAGACAGAGCTGGAAGCAAGAGCTAGACAGAAATACCTGGATATGGTAGAACAGACATCAGACAATTATGATGACAAAATGATTGATGATGGAAAGAAGCTGTGGATAAACAAGAGGAAGGCTTGTGACATTGATGAAACTGACCTGGAAATCAATGAAATCATTCCTAAAGACAGCCTGCCATCATCAGACATGAAAGTCCGCATAAATGAGCAGGAGGTACTCATTGAGATGAGATGCCCTTGGAGAGAATACTTATTGCTTGATATCATGGATGCCATAAACAACCTCCACTTGGATTGTCACTCAGTTCAATCATCAAACCATGACGGTTTTCTCACTTTAACACTTAAATCCAAGTTTCGAGGACGAGCAGTGGCATCAGCAGGGATGATCAAACAGGCACTATGGAGGATAACAAGCAAATGCTGA 1980 0.4303 MANGVQNQEGVPENLSKQLAVAVRSIQWSYAIFWSLSTRQQGVLEWSGGYYNGDIKTRKTVQEMELKADKMGLQRSEQLRELYESLLEGETDQQSKRPSAALSPEDLSDAEWYYLVCMSFVFNPGEGLPGRALANGQSIWLCDAQYADSKVFSRSLLAKSASIQTVVCFPHMGGVIELGVTELVPEDPSLIQHIKACLLELSKPICSEKSSFVPCNTDDDKDRMCAKVDHDIVETMALEKLYPATEEIKFEQEGMSELHGNIHEEHNIGSPDDCSNGCEDDHQTEDSFMLEGINGGASQVQSWHFVDDDFSNGVQGSMDSSDCISQAFVNQERIHSSPKGENVNNVRLKDLQECNDTKFSSLDLGADDDLHYRRTISTVLRKSHPLIGNSCFRCYDIKSSFITWKKGGMLDAQKPQTQQRILKKILFTVPLMHGGCGFKSQKENAGRDGLWKSGSDGICKQHALSDKKREKEKFLVLRSMVPSINKIDEVSILGDTIEYLKKLEARVEELETSMDLQTELEARARQKYLDMVEQTSDNYDDKMIDDGKKLWINKRKACDIDETDLEINEIIPKDSLPSSDMKVRINEQEVLIEMRCPWREYLLLDIMDAINNLHLDCHSVQSSNHDGFLTLTLKSKFRGRAVASAGMIKQALWRITSKC* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1105 659 SMART finulus 463 509 IPR011598 GO:0046983
Vvi15g1105 659 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 459 514 IPR036638 GO:0046983
Vvi15g1105 659 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 15 197 IPR025610 -
Vvi15g1105 659 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 454 503 IPR011598 GO:0046983
Vvi15g1105 659 Gene3D - 460 519 IPR036638 GO:0046983
Vvi15g1105 659 PANTHER TRANSCRIPTION FACTOR TT8 5 657 - -
Vvi15g1105 659 Coils Coil 493 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1105 Vvi-Chr15 19339052 19343536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1105 1 659 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 45.918 5.00e-176 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1105 - - vri:117932172 1336.63