Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1097 ATGTCAAGCACTGGAGAAATCGTGGAGGAACAGCCGCTGGCTCTTGTGGTCGAAGATAAGATATTTGTGGCAGTTGGCAAAGAAGTGAAGGAGAGTAAATCGATTCTGGTGTGGGCGTTACAGAACTCTGGAGGCAAAAGAATTAGTATAGTTCATGTTCATCAGCCGGCCCAGATGATCCCTATAATGGGTGGGAAATTTCCTGCCAGCAAACTGAAGGAGCAGGAGGTCAAAGCCTACCGAGATCTTGAGAGGCAAGATATGCACAAGATTCTAAATGACTACCTTCTCATTTGTAGGAAAGCAGGGGTGAGAGCGGAGAAACTGTATATCGAGTCAGAGAATGTGGAGAAGGGTATTTTGGAACTCATTTCTGAACATGGGATCAAGAAACTGGTCGTGGGTGCAGCAGCGGATAAGCACTACTCAAGGAGAATGTTAGAGCCGAAGTCAAAGAAGGCAGCATATGTGCGGGATAAGGCTCCTTTATTCTGTCATATTTGGTTCGTATGCAGGGGGCACCTCATCTACACAAGGGAAGGTAGCTTGAATGGGGCTGATATAGAGCTCAGAACACCTCCATCACAGCAAGCGAGTCCAAACAATGAAACAGGGCAATCAAATACCTTCAGATCAATGTCCGTATCTCTGGGGCAGAATCATCCATCAAAACTTGTCAATCCAGGTCAAGACTTACCCAGAACAATGTCAGTCCCCGTGAGAATTACAGTGCTTTCTTCCCCTGATGGTACTGGAGGGGTGTCTGCACCATGGAGCAGGATGGGTAGGGAAGGGAGTTCCGACTATTGGGATGGGATATCAAAGAGAAGTCCTTCTCAGGCTTCAGGTTTTTCTACGTGCTCCTCAGGTGACATGGCTGGTGAGGTAAATGAAGATGGATTAGAGTCACGTGCGTCTCCTGTAGCCAAGCAGGCTCTTCACCATTCATCTCCTCCCAGTGTACTGGAAGAAAATATTTATGATCAACTTGAGCAAGCAATGGTGGAAGCTGAAAATTCCAGGCGGGAAGCTTTTCAAGAGTCTCTTAGGCGCAGCAAAGCTGAAAAAGATGCTATTGAGGCTATTCGCAGGGCTAAAGAAGCCGAAAGATCATTTAGTGAGGAGTTGAAACTGCGGAGAGACATTGAGGAGGCATTACAAGCCCAAGGAAAAGAACTTGAAAGCCTGAGGAACAAGCAACAAGAAATCATGGAAGAACTGAAGATTTCTTTGAATCATAAGTCGCTTCTGGAGAATCAAATTGCAGATTCTGAGCAGGTGGTAAAGGAGTTGGAGGAGAAGATTATCGCTGCCGTGGAGCTGTTACAGAATTACAAGAAAGAACGGGATGAGTTGCAGATTGAGCGTGACAATGCAATCAAAACAGCTGAGGAACTCAAGAAAAAGGGAGCATCAACTTCACATACGCCTCAGTACTTTGCTGAGTTCTCTTTTGCAGAAATTGAGAAAGCAACTCAGAACTTTGATCCATCAGTGAAAATTGGGGAAGGGGGGTATGGAAGCATTTACAAAGGTTGCCTGCGCCATACCCAAGTGGCAATAAAGATGCTGCATTCTGATAGCTTCCAAGGCCCAACAGAATTTCAACAGGAGGTCGACATTTTGAGTAAGTTGAGGCATCCAAATTTGGTAACTCTCATAGGTGCTTGCCCAGAAGCCTGGGCACTCATCTATGAGTATCTTCCAAATGGAAGCCTGGAAGACCGACTCAACTGCAGGGACAACACTCCCCCACTGTCATGGCAAGCTCGTATTCGCATTGCAGCAGAGCTATGCTCCGTGCTCATCTTCCTTCATTCCAATAATCCTGACAGTATAGTGCATGGAGATTTGAAGCCTAGCAATATTCTTCTGGATGCCAACTTTGGGAGCAAGCTTAGCGACTTTGGAATCTGTCGTGTGATCTCTCATGATGGAAATTCGAGCAACAGTGCAACCATGTGTTGCAGAACTGGCCCAAAGGGAACTTTTGCCTATATGGATCCTGAGTTCCTCTCTTCAGGGGAGCTCACTGTAAAGTCAGATGTATACTCATTCGGAATTATATTATTACGGTTGTTAACTGGGAAACCAGCAATTGGGATCACAAAAGAAGTGCAACATGCATTAGATCAGGGAAATTTGAACACCCTGTTGGATCCCTTGGCTGGGGACTGGCCCTTTGTGCAGGCTAAGCAGTTGGCTCTCATGGCACTGAGGTGCTGTGAGATGAACAGGAAGAGCAGGCCAGACCTTGTCTCAGAAGTATGGAGGGTGCTTGAACCCATGAAGGTTTCATGTGGAGCTTCATCATCATCATTTCGGGTCGGTTCTGAAGAGCGTGGCCAGATTCCACCCTACTTCATTTGTCCCATTTTCCAGGAAATCATGCAAGACCCTTGTGTGGCAGCTGATGGGTTCACCTATGAGGCCGAGGCTCTGCGAGGATGGCTTGATGGCGGCCACAGCACTTCACCCATGACAAACCTGAAGCTTGGTCACCTGAATCTTGTCCCCAACCGGGCTCTTCGCTCTGCAATTCAGGAGTGGTTGCAGCAGCCCTGA 2565 0.471 MSSTGEIVEEQPLALVVEDKIFVAVGKEVKESKSILVWALQNSGGKRISIVHVHQPAQMIPIMGGKFPASKLKEQEVKAYRDLERQDMHKILNDYLLICRKAGVRAEKLYIESENVEKGILELISEHGIKKLVVGAAADKHYSRRMLEPKSKKAAYVRDKAPLFCHIWFVCRGHLIYTREGSLNGADIELRTPPSQQASPNNETGQSNTFRSMSVSLGQNHPSKLVNPGQDLPRTMSVPVRITVLSSPDGTGGVSAPWSRMGREGSSDYWDGISKRSPSQASGFSTCSSGDMAGEVNEDGLESRASPVAKQALHHSSPPSVLEENIYDQLEQAMVEAENSRREAFQESLRRSKAEKDAIEAIRRAKEAERSFSEELKLRRDIEEALQAQGKELESLRNKQQEIMEELKISLNHKSLLENQIADSEQVVKELEEKIIAAVELLQNYKKERDELQIERDNAIKTAEELKKKGASTSHTPQYFAEFSFAEIEKATQNFDPSVKIGEGGYGSIYKGCLRHTQVAIKMLHSDSFQGPTEFQQEVDILSKLRHPNLVTLIGACPEAWALIYEYLPNGSLEDRLNCRDNTPPLSWQARIRIAAELCSVLIFLHSNNPDSIVHGDLKPSNILLDANFGSKLSDFGICRVISHDGNSSNSATMCCRTGPKGTFAYMDPEFLSSGELTVKSDVYSFGIILLRLLTGKPAIGITKEVQHALDQGNLNTLLDPLAGDWPFVQAKQLALMALRCCEMNRKSRPDLVSEVWRVLEPMKVSCGASSSSFRVGSEERGQIPPYFICPIFQEIMQDPCVAADGFTYEAEALRGWLDGGHSTSPMTNLKLGHLNLVPNRALRSAIQEWLQQP* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1097 854 CDD STK_N 20 173 - -
Vvi15g1097 854 Gene3D Phosphorylase Kinase; domain 1 480 567 - -
Vvi15g1097 854 Coils Coil 323 371 - -
Vvi15g1097 854 SUPERFAMILY Protein kinase-like (PK-like) 473 760 IPR011009 -
Vvi15g1097 854 ProSiteProfiles U-box domain profile. 783 854 IPR003613 GO:0004842|GO:0016567
Vvi15g1097 854 Gene3D Transferase(Phosphotransferase) domain 1 568 768 - -
Vvi15g1097 854 Gene3D HUPs 19 162 IPR014729 -
Vvi15g1097 854 Pfam U-box domain 784 853 IPR003613 GO:0004842|GO:0016567
Vvi15g1097 854 FunFam receptor-like protein kinase FERONIA 458 567 - -
Vvi15g1097 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 782 854 IPR013083 -
Vvi15g1097 854 ProSitePatterns Protein kinases ATP-binding region signature. 501 522 IPR017441 GO:0005524
Vvi15g1097 854 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 31 151 - -
Vvi15g1097 854 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
Vvi15g1097 854 Pfam Protein kinase domain 498 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g1097 854 SMART serkin_6 495 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g1097 854 CDD RING-Ubox_WDSUB1-like 785 840 - -
Vvi15g1097 854 SMART Ubox_2 787 850 IPR003613 GO:0004842|GO:0016567
Vvi15g1097 854 CDD STKc_IRAK 501 763 - -
Vvi15g1097 854 Coils Coil 414 469 - -
Vvi15g1097 854 Coils Coil 379 406 - -
Vvi15g1097 854 MobiDBLite consensus disorder prediction 187 233 - -
Vvi15g1097 854 SUPERFAMILY RING/U-box 777 853 - -
Vvi15g1097 854 PANTHER OS02G0152300 PROTEIN 21 849 - -
Vvi15g1097 854 MobiDBLite consensus disorder prediction 189 226 - -
Vvi15g1097 854 ProSiteProfiles Protein kinase domain profile. 495 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1097 Vvi-Chr15 19246513 19253297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1097 8 853 U-box Gene Family AT2G45910 53.774 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vvi15g1097 Pkinase 6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1097 - - vvi:100243070 1692.55