Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1078 ATGGTTTCTGTAAACCCTAACCCACCACAAGGCTTCTACTTGGATCCGATGCAAATGGGACTTCCTGCTCTTGGGTCTCTGCAGCCTACTACTGCTTCTGTTGCTGCGTCGTCTTCGTCGGAGGATCCGAATAAGAAGATCCGGAAGCCCTACACCATCACCAAGTCCAGGGAGAGCTGGACCGAGCAAGAGCACGATAAGTTTCTCGAAGCTTTACAACTTTTTGATCGAGATTGGAAGAAGATCGAAGCATTTGTTGGGTCCAAAACAGTTATCCAGATACGTAGCCATGCGCAAAAGTACTTTTTGAAGGTTCAGAAAAATGGTACAAGTGAACATGTGCCTCCTCCTCGGCCAAAGAGGAAAGCAGCCCATCCATACCCACAAAAAGCCTCTAAAAATGCTCCAGTGTTTCCCCAAGATACCATGGCATTTCAAACTTCAGCTACTTTGCTTGAACCTGGATTTGTTCTGAGGCCAGATTCATCATCAGTGCTTAGAAATCCAATGAACAATGCAGCTTTGTCTTCCTGGACTTACAACTCTCAACCTCCAGTCAGTGTATCACATGTGACAAAAGATGAGGTAGGATTGGCTGGGCCAGCTATGCAACATAATAATTGCTGCAGTAGTAGCAATGAAAGCACTCCAAGGTCTTGGCCAATTTGTAAAACACATGATCAGGGAAATCAAAGCTTGCCAATACGAGTTATGCCAGATTTTGCTCAAGTGTACAGCTTCATCGGTAGTGTTTTTGACCCCAATGGAAGTGGTCACTTGCAGAAATTAAAGAACATGGACCCAATAAATATGGAAACGGTATTGCTATTGATGAGAAACCTTACAATCAATTTAACAAGCCCTGAATTTGCAGATCATAGGAAGTTGCTCTCATCTTATGATGCTGACTTTGAGAAGGCTAAATCCAGCAGCACTCGCAGTATTCTCCATGTTGGTAAATCAGAGAGTGCTATTCTATCAGCATAA 987 0.4377 MVSVNPNPPQGFYLDPMQMGLPALGSLQPTTASVAASSSSEDPNKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKASKNAPVFPQDTMAFQTSATLLEPGFVLRPDSSSVLRNPMNNAALSSWTYNSQPPVSVSHVTKDEVGLAGPAMQHNNCCSSSNESTPRSWPICKTHDQGNQSLPIRVMPDFAQVYSFIGSVFDPNGSGHLQKLKNMDPINMETVLLLMRNLTINLTSPEFADHRKLLSSYDADFEKAKSSSTRSILHVGKSESAILSA* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1078 328 NCBIfam myb-like DNA-binding domain, SHAQKYF class 55 104 IPR006447 GO:0003677
Vvi15g1078 328 MobiDBLite consensus disorder prediction 106 135 - -
Vvi15g1078 328 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Vvi15g1078 328 ProSiteProfiles SANT domain profile. 55 108 IPR017884 -
Vvi15g1078 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 106 IPR017930 -
Vvi15g1078 328 PANTHER SWI/SNF COMPLEX-RELATED 31 288 - -
Vvi15g1078 328 Pfam Myb-like DNA-binding domain 57 102 IPR001005 -
Vvi15g1078 328 CDD SANT 59 102 IPR001005 -
Vvi15g1078 328 SUPERFAMILY Homeodomain-like 51 107 IPR009057 -
Vvi15g1078 328 SMART sant 56 104 IPR001005 -
Vvi15g1078 328 MobiDBLite consensus disorder prediction 29 49 - -
Vvi15g1078 328 Gene3D - 60 107 - -
Vvi15g1078 328 FunFam protein REVEILLE 6 isoform X1 59 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1078 Vvi-Chr15 19039048 19043162 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi15g1078 Myb_DNA-binding 2.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1078 - - vvi:100855334 651.358