Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1073 ATGCTCGGAGGTAGTACATTCGCCAAAACAATATGCACGATCTGCTACGAAGATCTCAAGCCAATCGTCGAAGACCTCCAATCCATCTCCGTCTGCGGCCATGTCTTCCACGAACTCTGTTTGCAACAGTGGTTCGAGTACTGCGCGAATAAGAAGAAGAACAGCTGTCCTGTGTGCAAGCAGACTTGTTCTTTGAATGGTGTTAATCGGCTTTACTTTCAGTCAATCGGCGATGCGAGCGATCCGACCTTATCTCAGAAACCGCTTAATATCGAGGAAGATCCAGGGGCATTACGTAGAGAGGTCAAGAGATTGGAGGTAAAGGTAGCGGGTCTCACTTCCGTTTTGGAACGGAACCAGAAGGATCTCAAAGAGCTCAATGAGGAGCTGTGCCTTTGCAAGGAGCAGTTTAAGGAGGAGGCAGCGCTGAAGAATGAAATCTTGAAACAGAAAGCATTCATTCAACAGTTGCTTTTTTCAAAATCTCAGGATCTGGATAAATCAAACCTGGAGTGTTCAAGACTGCAGGAGAGAAACATGGCCTTGGCTAAAGAGCTTGCAGCACTTAAATTGGTATCTGATCTGAGCCTGGATGAAGAAGGGGTTTTGAAGCTGGCTTCTTTTGGTAATGAGGCTAACAACAAGGATACAATAGACATTCTAAAGAGGTCACTGGTCATTCGTAACAAGAGTTACAAAGAATTGATGGCAAAATGCAATCTTCTAGGAAGAGGAGAGGCTCGCTCTGTTAGAAAACTTGAGAAGGCTAAAGGGAAGATACAAAAACTAAAGACAAGGGTTCAAGAGTTGGAGACAGCCATTGAAGTGAAAGACAATGAAGTTTTGAGAGCTTTAATTGCTTCCAAGAAAAGAATTGATGAAGAGGCTAATCTGAATAGTATTAAATGTAACTTTAGTTCTTCACCAATCAATGATTTTTCCCCAGAAGATTGCAAGGATCAACCAGCTGTACCTATATCTAAATCAGATCAGATTGGGAACTTGAACAATGGCCCACTTTCTTCCAAGACAGCAGGAAATTCGAATTCCATCAAAGATACGAGTGTAGATTACAGCAAAAGCAATGTTAATGTTGTGGCTCTAGATCAAGATATAGATCCTTGCCTTCTAATAGACAGAGATGTTTTAGAAATTTCTGCAGCTATGCATGAGCTTCCAGATCCTTATTTGAAACCTAAATCCACCAAGGCTGTGGCTGTTCAGAACTCCAGCATATTAGTTCCTGGGGCAGCCTCTGCTATCAGCAGAAAACCTTTAGCACAAGGACCAGGTAACAGCATTGGACTTTCAGGTTCAAGGACTAGTACCGAGAAAGATATGTATGATGCTCCTGTTGCTGCTGAAGACAAGCATGTAAAGTTACTTGTAGATGACATTGAACAACTTCAACCTTTACCTCAGATTAGAAAAGAGGCTCCTTTTCCAATTCGATTCGCCAAACCAGGAGATAAATGCTTTGCTCCTGGACTGATAGGTCCTGATGGAACGCCCAGGTACTTAGGAAAATGGTGCAAGCGGGACAAGGCCAACGGATCAAATCCATCATCTGTAGGCATGCAAGGATCAAGCACAAGCACTGGTGATTTGATTGCTGTTGGAGCTGATGGGAGAGGTGGTAGAATCAAAGTTCTGAGATCTCACAATCAGCCTTCAGTGGATAGGAAGGAGACTTCCGCGTGGGCAAAGAGATGCAAGCTTGGAACTAAGACGAATGGTTTGCAGTCTCAGGGGTGCTTGCAGATAGAACATTTTTTCTCAAAAACTGGTCGATAA 1794 0.4331 MLGGSTFAKTICTICYEDLKPIVEDLQSISVCGHVFHELCLQQWFEYCANKKKNSCPVCKQTCSLNGVNRLYFQSIGDASDPTLSQKPLNIEEDPGALRREVKRLEVKVAGLTSVLERNQKDLKELNEELCLCKEQFKEEAALKNEILKQKAFIQQLLFSKSQDLDKSNLECSRLQERNMALAKELAALKLVSDLSLDEEGVLKLASFGNEANNKDTIDILKRSLVIRNKSYKELMAKCNLLGRGEARSVRKLEKAKGKIQKLKTRVQELETAIEVKDNEVLRALIASKKRIDEEANLNSIKCNFSSSPINDFSPEDCKDQPAVPISKSDQIGNLNNGPLSSKTAGNSNSIKDTSVDYSKSNVNVVALDQDIDPCLLIDRDVLEISAAMHELPDPYLKPKSTKAVAVQNSSILVPGAASAISRKPLAQGPGNSIGLSGSRTSTEKDMYDAPVAAEDKHVKLLVDDIEQLQPLPQIRKEAPFPIRFAKPGDKCFAPGLIGPDGTPRYLGKWCKRDKANGSNPSSVGMQGSSTSTGDLIAVGADGRGGRIKVLRSHNQPSVDRKETSAWAKRCKLGTKTNGLQSQGCLQIEHFFSKTGR* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1073 597 Coils Coil 165 192 - -
Vvi15g1073 597 Coils Coil 109 129 - -
Vvi15g1073 597 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 595 - -
Vvi15g1073 597 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 85 IPR013083 -
Vvi15g1073 597 Coils Coil 253 280 - -
Vvi15g1073 597 SMART ringv_2 11 60 IPR011016 GO:0008270
Vvi15g1073 597 SUPERFAMILY RING/U-box 11 65 - -
Vvi15g1073 597 Pfam Ring finger domain 11 60 IPR001841 -
Vvi15g1073 597 MobiDBLite consensus disorder prediction 424 443 - -
Vvi15g1073 597 SMART ring_2 12 59 IPR001841 -
Vvi15g1073 597 MobiDBLite consensus disorder prediction 313 354 - -
Vvi15g1073 597 MobiDBLite consensus disorder prediction 327 354 - -
Vvi15g1073 597 CDD RING-H2 12 60 - -
Vvi15g1073 597 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1073 502 597 C3H Transcription Factor Family AT4G01270 52.577 6.17e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1073 K11985 - vvi:100265462 1166.76