Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1071 ATGGAGGAAGATTGGGATCTGCAAGCGGTGGTCAGAGGCTGCGCCACCGCCACCGTCGCCTCTGCCGCCACCACGACGACCACAGCTACTACCAGTGATGCAGCTGCTTTGGATCTTCATAGGAGTTCTTGCTTTTCTCCGTTTGATGTGGTGGAGCAAGCTCATCATCATGACGGCCATCTTCTCTGCTTTCCAGATCCGTTCGAGACCAGGAGGGAAGCTTTTGTGGAGGAATTGCATGATCTTTGCAGACCCTTCTTCCCCAAATCTCAGCCTATCTCTCCCCGGACTATACCCATATCTTCTCTCTCTGTTCTAGGAGGAGGATTCAGTGATCAAACCCACCAAATTCAGCAGCAACAGAAGCAAGACCCACCACCCTCAAAGCACTCTCATGCAAGCTCTGTGCCCTCCACTACGCATTCTCAGAGCCCAAGATCCAAGCGAAGAAAGAATCAGATGAAGAAGGTTTGTCACATACCAGCTGAGGGGTTGTCTTCCGACATGTGGGCTTGGAGAAAGTATGGGCAAAAACCCATCAAAGGTTCTCCATATCCAAGGGGTTATTACAGATGTAGCAGTTCAAAGGGGTGTTTGGCCCGAAAACAGGTGGAGCGAAACAGATCCGACCCAGATATGTTCATCGTCACCTACACAGCAGAGCACAACCACCCTATGCCCACCCACAGGAACTCTCTCGCCGGAAGCACCCGCCAGAAGCCGGTGACCCCTCCTGCAGCAGCCACCACCACCGCCTCCGCTGACGCCGTAAAACCCTCGGCCAAACCCGCATGTTCCTCGCCGGCGACTTCCGCGGACGATGAGCTTGTACAGCAAAGCACAAGCGTGCAGAGCAAAGATTTGGTGGAAGACGAGGAAGACGACGAGCTGGGGTTCTCCGACACGGCCGTGGACGACGATTTCTTCATGGGGTTGGAGGAACTCGCCGAACAAGTCACCGGAGACTGCTTCCCCGATCACTTCCCGCCCAGCTTCCCCATTCCTTGGCTGGCCAACAATGCTGCAACAGCCGCCGGCGGGATCTGA 1047 0.5501 MEEDWDLQAVVRGCATATVASAATTTTTATTSDAAALDLHRSSCFSPFDVVEQAHHHDGHLLCFPDPFETRREAFVEELHDLCRPFFPKSQPISPRTIPISSLSVLGGGFSDQTHQIQQQQKQDPPPSKHSHASSVPSTTHSQSPRSKRRKNQMKKVCHIPAEGLSSDMWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPDMFIVTYTAEHNHPMPTHRNSLAGSTRQKPVTPPAAATTTASADAVKPSAKPACSSPATSADDELVQQSTSVQSKDLVEDEEDDELGFSDTAVDDDFFMGLEELAEQVTGDCFPDHFPPSFPIPWLANNAATAAGGI* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1071 348 MobiDBLite consensus disorder prediction 264 285 - -
Vvi15g1071 348 SUPERFAMILY WRKY DNA-binding domain 164 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi15g1071 348 MobiDBLite consensus disorder prediction 224 256 - -
Vvi15g1071 348 ProSiteProfiles WRKY domain profile. 161 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g1071 348 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 318 IPR044810 GO:0003700
Vvi15g1071 348 MobiDBLite consensus disorder prediction 109 155 - -
Vvi15g1071 348 FunFam WRKY transcription factor 22 150 220 - -
Vvi15g1071 348 Gene3D WRKY domain 150 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi15g1071 348 MobiDBLite consensus disorder prediction 109 143 - -
Vvi15g1071 348 Pfam WRKY DNA -binding domain 168 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g1071 348 SMART WRKY_cls 166 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g1071 348 MobiDBLite consensus disorder prediction 220 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1071 Vvi-Chr15 18957513 18958738 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1071 1 348 WRKY Transcription Factor Family AT4G01250 47.875 1.03e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi15g1071 WRKY 2.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1071 K13425 - vvi:100256849 658.292