Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1067 ATGGATGGAGATGGAGACCACGCCCCGCCACCACCACCACCACCACTATTGCCATTGCCATCTCAAGCCTCTTCTTTCCTCTTCACACCCTCATTGCCATCCTCCTCAATGCACCCACATCTTCAACTCCCACCACCACCACTGCCGCCACTGCAAGCTCAAATCCTTGGAGATATTGACTGGGCTACCCTTCTCTCCGCCCAAACCGGGCTCAGCGACCTTTACCCAAGAGCTGAAGGCACCTCTTCTGTAATGGCCGAGGAAGAAAAGGGCAGCATCAAGGATAGGAGGAAGGGTGTTAGGACGACGAGAAAAGCAACCCGACCGCGGTTCGCCTTTCAGACGAGGAGCGTGGATGATATTCTTGATGATGGATATCGCTGGAGGAAGTATGGGCAGAAAGCTGTGAAGAACAGCATCTATCCCAGGAGCTACTATCGCTGTACACATCACACATGCGATGTGAAGAAACAGGTACAGAGGCTCTCAAAGGATACAAGCGTTGTGGTGACAACATATGAAGGCATCCACAACCATCCCTGTGAGAAGCTGATGGAAACCCTAAGTCCTCTCTTGAAGCAAATACAGTTCCTCTCTAGATTCTAA 606 0.5132 MDGDGDHAPPPPPPPLLPLPSQASSFLFTPSLPSSSMHPHLQLPPPPLPPLQAQILGDIDWATLLSAQTGLSDLYPRAEGTSSVMAEEEKGSIKDRRKGVRTTRKATRPRFAFQTRSVDDILDDGYRWRKYGQKAVKNSIYPRSYYRCTHHTCDVKKQVQRLSKDTSVVVTTYEGIHNHPCEKLMETLSPLLKQIQFLSRF* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1067 201 SMART WRKY_cls 122 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g1067 201 Gene3D WRKY domain 106 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi15g1067 201 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 88 183 IPR044810 GO:0003700
Vvi15g1067 201 FunFam WRKY transcription factor 57 108 182 - -
Vvi15g1067 201 ProSiteProfiles WRKY domain profile. 117 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g1067 201 MobiDBLite consensus disorder prediction 1 20 - -
Vvi15g1067 201 MobiDBLite consensus disorder prediction 1 49 - -
Vvi15g1067 201 Pfam WRKY DNA -binding domain 123 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g1067 201 SUPERFAMILY WRKY DNA-binding domain 116 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi15g1067 201 MobiDBLite consensus disorder prediction 22 38 - -
Vvi15g1067 201 MobiDBLite consensus disorder prediction 80 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1067 Vvi-Chr15 18940954 18942146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1067 89 201 WRKY Transcription Factor Family AT5G41570 69.027 3.49e-56 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi15g1067 WRKY 8.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1067 - - vvi:100267186 347.051