Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1059 ATGTCCACCACCCCCATCACTCCCTCTTCCTACGCCTCCGCCGCCGCCGCCGCCGCTGCCGCTCCTCCTCCTCCCACCTACCTCTCCAACCTCGGCCTCGGCTACGCCATCGCCATCGCCTTTGCCTTCCTCGTCCTCCTCTCCACCGTCCTTCTTGCCTCCTACCTCTGCTGCCGCCGCCGCCCCCTTTCTCCACACCACTCCCGAAACCCCGCTTCCGCTGCCAACTCCTCCGACGGCATCGTCCTACCCCGCATCATATTCGTGGCCGAAGACGAAGACGAGGACCAGAACGTCGTCGTTGGACTCGACCAAGCTGTGATTGACTCCTACCCGAAGTTCCCTTTCTCCAAATCCAACACCCACCTGGATTCAGTCTGCTCAATCTGTCTCTGCGAGTACAAGGACTCGGAGATGCTGAGAATGCTGCCGGACTGCCGCCACTGCTTCCATCTCTACTGCGTCGACGCGTGGTTGAAGCTCAACGCGTCTTGCCCTGTTTGCCGGAACTCGCCGCTGCCCACTCCTCTTTCGACGCCGCTGTCGGAGCTGGTTCCGCTGTCGCAGTACCCGGCTGATCGGAGGAGGAGGTGA 594 0.6229 MSTTPITPSSYASAAAAAAAAPPPPTYLSNLGLGYAIAIAFAFLVLLSTVLLASYLCCRRRPLSPHHSRNPASAANSSDGIVLPRIIFVAEDEDEDQNVVVGLDQAVIDSYPKFPFSKSNTHLDSVCSICLCEYKDSEMLRMLPDCRHCFHLYCVDAWLKLNASCPVCRNSPLPTPLSTPLSELVPLSQYPADRRRR* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1059 197 SUPERFAMILY RING/U-box 107 174 - -
Vvi15g1059 197 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Vvi15g1059 197 PANTHER RING-H2 FINGER PROTEIN ATL67 1 197 IPR044289 GO:0016567|GO:0016740
Vvi15g1059 197 SMART ring_2 127 168 IPR001841 -
Vvi15g1059 197 CDD RING-H2_EL5-like 127 169 - -
Vvi15g1059 197 Pfam Ring finger domain 127 169 IPR001841 -
Vvi15g1059 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 173 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1059 Vvi-Chr15 18874077 18874670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1059 29 188 C3H Transcription Factor Family AT5G07040 43.558 1.36e-38 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1059 - - vri:117931610 359.377