LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi15g1055	ATGTCAGTATACGACGCTGCGTTTTTGAACAGTGAACTCTCGAAGCCGACTTCTATCTTTGGGCTCCGGCTATGGGTAGTGATAGGAATCTTCGTCGGAGCCGTCATTGTGATTATTTTGTTCCTGCTGTCCCTCTGCATCACTTCTCGCCGCCGGAGACCTCCTAGTTCTAGTAAGCTTGGCGCAGGCGAGTTTACTCCGGTGGTGTCGAAGGAGATTCAGGAGATCGTTCACGAAGCTGCTCCCGACCACCGGCCGGTGCTGCCTCCAGCGTCGGAGATCCAGATCGACATTGGGAAATCAGAGCACCGCGTGGTGTTCTCCGACCGGCTGTCGTCGCAGGCGAGCGGGGAGAGCCGGGCGACGAGCGTGACTGAAACGGCGTCATTAGGGGGTGGGCCGCCCGAGGTGTCGCACCTGGGGTGGGGACGGTGGTACACGTTGAGAGAGCTTGAAGCGGCGACGAACGGTTTGGCTGACGAAAATGTGATCGGGGAAGGAGGTTATGGAATTGTCTATAGAGGTGTGCTGGCTGATAACACGAGAGTGGCTGTGAAGAACTTGTTGAATAACAGAGGCCAAGCTGAGAAGGAATTCAAAGTGGAGGTTGAAGCCATAGGCCGGGTCCGGCACAAGAATCTTGTTAGGTTGCTGGGATACTGTGCTGAGGGAGCTTACAGGATGCTTGTGTATGAGTATGTGGACAATGGTAATTTGGACCAGTGGCTTCATGGGGATGTAGGGGAAGTCAGCCCTCTGACATGGGATATTCGGATTAACATTATATTAGGAACAGCCAAAGGATTGGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTCCATCGAGATGTAAAATCTAGCAACATACTACTTGATCGCCAATGGAACTCTAAGGTGTCTGATTTTGGGCTGGCAAAGCTCTTATGTTCTGAGATAAGTTATGTAACGACTCGTGTGATGGGAACATTCGGGTATGTTGCACCAGAATATGCTTGCACTGGTATGCTGAATGAAAAAAGCGATGTTTATAGCTTTGGAATTCTTATTATGGAGATAATTTCAGGCAGAAATCCTGTTGATTATAGCCAAGCACCTGGAGAGGTGAATTTGGTGGATTGGTTAAAGACAATGGTGGGAAATCGAAAATCTGAGGAAGTCGTGGACCCTAAGTTACCTGAGATGCCTTCTTCAAAAGCACTCAAACGTGTTCTTTTAGTTGCTCTCCGGTGTGTTGATCCTGATGCAACAAAGAGGCCCAAAATGGGACATGTAATCCACATGCTTGAGGCCGATGACCTACTATTCCGAGATGAGCGCCGCATTGGCAGAGAATCATCCCATTCCCATCACGATTATCAGCAAGAGAATCATGCTAATAGGAAAATAGACAATAAACAGTTGGATGAAGGGGCTTGTGACTCAAGTGAATGTGCCGACAGTGGAAGGAGCCAATACCCACAAACTAAATGGAGATAA	1479	0.4902	MSVYDAAFLNSELSKPTSIFGLRLWVVIGIFVGAVIVIILFLLSLCITSRRRRPPSSSKLGAGEFTPVVSKEIQEIVHEAAPDHRPVLPPASEIQIDIGKSEHRVVFSDRLSSQASGESRATSVTETASLGGGPPEVSHLGWGRWYTLRELEAATNGLADENVIGEGGYGIVYRGVLADNTRVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAYRMLVYEYVDNGNLDQWLHGDVGEVSPLTWDIRINIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLAKLLCSEISYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMEIISGRNPVDYSQAPGEVNLVDWLKTMVGNRKSEEVVDPKLPEMPSSKALKRVLLVALRCVDPDATKRPKMGHVIHMLEADDLLFRDERRIGRESSHSHHDYQQENHANRKIDNKQLDEGACDSSECADSGRSQYPQTKWR*	493

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi15g1055	492	ProSitePatterns	Protein kinases ATP-binding region signature.	164	186	IPR017441	GO:0005524
	Vvi15g1055	492	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	280	292	IPR008271	GO:0004672\|GO:0006468
	Vvi15g1055	492	MobiDBLite	consensus disorder prediction	111	132	-	-
	Vvi15g1055	492	ProSiteProfiles	Protein kinase domain profile.	158	435	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi15g1055	492	Gene3D	Phosphorylase Kinase; domain 1	135	233	-	-
	Vvi15g1055	492	MobiDBLite	consensus disorder prediction	478	492	-	-
	Vvi15g1055	492	Gene3D	Transferase(Phosphotransferase) domain 1	234	442	-	-
	Vvi15g1055	492	FunFam	Probable serine/threonine-protein kinase At1g01540	138	233	-	-
	Vvi15g1055	492	MobiDBLite	consensus disorder prediction	445	473	-	-
	Vvi15g1055	492	Coils	Coil	178	198	-	-
	Vvi15g1055	492	CDD	STKc_IRAK	164	430	-	-
	Vvi15g1055	492	MobiDBLite	consensus disorder prediction	445	492	-	-
	Vvi15g1055	492	SUPERFAMILY	Protein kinase-like (PK-like)	136	430	IPR011009	-
	Vvi15g1055	492	FunFam	Putative receptor-like serine/threonine-protein kinase	234	444	-	-
	Vvi15g1055	492	PANTHER	OS01G0323000 PROTEIN	7	458	-	-
	Vvi15g1055	492	SMART	serkin_6	158	436	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi15g1055	492	MobiDBLite	consensus disorder prediction	111	129	-	-
	Vvi15g1055	492	Pfam	Protein kinase domain	160	427	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi15g1055	Vvi-Chr15	18836577	18839407	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi15g1055	126	430	Receptor kinase-like Gene Family	AT4G02010	46.602	2.82e-91	291

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-V	Vvi15g1055		Pkinase	1.4e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi15g1055	-		-	vvi:100852854	962.214