Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1046 ATGGCTGGAATTAGGTTTCCAATTTTGAAGTCACTTTGTGATCCCATCTCAAAAACGCATTCGTTTAGATCGTATGATTCTTGTTTGGATTTTGCAAAATATGCCTATCAAGTTGAATTAAAATCATCATATGCTTCTAGTAATCGTAGTAACCACACAAAAGAATCTCCATTTGCTGCTAATTTTGTAAATGCTCGTTTTAGAATACCGTCTATTGCATCTCCTGTAGATACTCAATGTTACAAAGCCAAACAAGTCAATGCATTTTCACCCACATTACTGAATTCACGCTTTGGGAGTAGTATACCTCTTATTTCTGTAATCCCAATTTCAAAATATAGATCATATTCTTCTTATTTCGGTAGTAAAGGAGATAAACCCCAAGAAAAGGAAGTTCAGGCTGCTACTGGTATGAGTGAACCGGATGTTAGTAATAGTGGTGTTATGGGTAGTGATTGGTTGGATAAGGTTAAGGATGTTTGGCAGTCTACAGTCGATGCAGCGGCTTATAGAGGGCAAAAGGCTAAAGAAACTTCTGATGAACTGGCACCTTATGTTGACCAGTTGCTGGATTCACTTCCGTATCTTAAAACTGTTGTCATTCCAGTTGGGTGTACTTTGACTGCTACTATATTGGCTTGGGCGGTGATGCCGAGGCTTTTGAGGAGATTTCATAAGTATGCAACCCAAGGATCAGCTGTATTACTACTAGGAAGCTTACCTGAGGAGCAAGTTCCATATGAGAAAAGTTTTTGGAGTGCTTTGGAGGATCCAGTGCGATATCTAATCACCTTCATATCATTTACTCAAATAGGCACGATGATAGCACCAACCACAATTGCATCACAATACATTGGACCAGCTTGGAGGGGTGCACTTATCCTGTCATTTGTATGGTTTCTACATCGTTGGAAAACCAATGTGTTTGCTCGTGCTTTGGCTGCTCAGTCTGTAGTGGGGCTTGATCGAGAGAAGTTGCTAGCACTTGACAAACTTTCATCTGTTGGTCTATTTGTCCTTGGATTGATGGCATTAGCGGAGGCATGTGGGGTAGCTGTTCAATCTATTTTGACTGTTGGTGGCATAGGAGGAGTGGCTACTGCTTTTGCATCTAGAGACATTCTTGGGAATGTGCTAAGTGGTTTGTCTATGCAGTTCTCAAAGCCATTCTCACTTGGAGATACAATAAAAGCTGGATCCATAGAAGGTCAAGTTGTAGAAATGGGACTCACTACCACATCATTGCTGAATGCTGAGAAATTTCCTGTTATAGTTCCAAATTCGCTTTTTTCTAGTCAGGTAATTGTGAATAAATCACGGGCACAATGGCATGCTATGGCCACCAAAATTCCTTTGCAAAGCGACAATCTGGACAAGATTCCCCAGATATCAGATGATATAAAGAACATGCTAAGATCAAACTCAAAAATTTTCTTGGGAAAGGAGGCCCCTTACTGTTTCCTGTCTAGAGTAGAAAGGTCATATGCTGAGCTGACTATTGGATGCAATCTCAAACATATGAGCAAAGACGAGTTATACTCTACAGAACAAGATATTCTTCTGCAGTCGGTCCGTATAATTAAGCAGCATGGTTCTACATTGGGTAGCACTTTCTCCATGTAA 1623 0.4042 MAGIRFPILKSLCDPISKTHSFRSYDSCLDFAKYAYQVELKSSYASSNRSNHTKESPFAANFVNARFRIPSIASPVDTQCYKAKQVNAFSPTLLNSRFGSSIPLISVIPISKYRSYSSYFGSKGDKPQEKEVQAATGMSEPDVSNSGVMGSDWLDKVKDVWQSTVDAAAYRGQKAKETSDELAPYVDQLLDSLPYLKTVVIPVGCTLTATILAWAVMPRLLRRFHKYATQGSAVLLLGSLPEEQVPYEKSFWSALEDPVRYLITFISFTQIGTMIAPTTIASQYIGPAWRGALILSFVWFLHRWKTNVFARALAAQSVVGLDREKLLALDKLSSVGLFVLGLMALAEACGVAVQSILTVGGIGGVATAFASRDILGNVLSGLSMQFSKPFSLGDTIKAGSIEGQVVEMGLTTTSLLNAEKFPVIVPNSLFSSQVIVNKSRAQWHAMATKIPLQSDNLDKIPQISDDIKNMLRSNSKIFLGKEAPYCFLSRVERSYAELTIGCNLKHMSKDELYSTEQDILLQSVRIIKQHGSTLGSTFSM* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1046 540 Gene3D - 389 437 IPR023408 -
Vvi15g1046 540 Pfam Mechanosensitive ion channel 331 531 IPR006685 GO:0016020|GO:0055085
Vvi15g1046 540 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 290 371 IPR011014 GO:0016020
Vvi15g1046 540 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 153 537 - -
Vvi15g1046 540 Gene3D - 289 388 - -
Vvi15g1046 540 SUPERFAMILY Sm-like ribonucleoproteins 373 438 IPR010920 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1046 90 538 Mechanosensitive Ion Channel Family AT4G00290 64.588 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1046 K22047 - vvi:100261915 1057.74