Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1041 ATGGGGTTTCCTGTGGGATACACAGAGGTTTTCCTCCCAAAGCTTTTCCTCCACACACTCTCCTTTCTGGGTTTCATCAGGAAACTCATTTTCTCGCTCTTTCACTTTCTGGGTCTCTCCGATTTCCTGGAAACCGACGTTTCGTGGTCCGAAACGCAGGCGCAAGTGCCGGAATACCCTCCGGTATCGGCTGTTCTGATCCGTGAAATCCTGCCGGTGATGAAGTTCGGGGAGGCGGTTTGCGGCGGCGACGCGCCGGAGAGTTGCGCCGTATGTCTGTACGACTTCGAGGTCGGAGAAGAGATCAGGCGGTTGACCAATTGTAAACACATTTTCCACCGGAGCTGTCTGGACCGTTGGATGGACCACGATCAGAAGACCTGTCCGCTTTGTAGGACCCCATTTGTGCCTGATGAGATGCAAGATGAGTTCAATCAACGGCTCTGGGCTGCCTCTGGGATCACTGATTTTTACAGTGAATACGGTACCGTTTCGGGCTTGTAG 504 0.5317 MGFPVGYTEVFLPKLFLHTLSFLGFIRKLIFSLFHFLGLSDFLETDVSWSETQAQVPEYPPVSAVLIREILPVMKFGEAVCGGDAPESCAVCLYDFEVGEEIRRLTNCKHIFHRSCLDRWMDHDQKTCPLCRTPFVPDEMQDEFNQRLWAASGITDFYSEYGTVSGL* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1041 167 SMART ring_2 89 131 IPR001841 -
Vvi15g1041 167 ProSiteProfiles Zinc finger RING-type profile. 89 132 IPR001841 -
Vvi15g1041 167 PANTHER RING ZINC FINGER PROTEIN-RELATED 22 152 - -
Vvi15g1041 167 CDD RING-H2_RHA1-like 89 135 - -
Vvi15g1041 167 Pfam Ring finger domain 88 132 IPR001841 -
Vvi15g1041 167 SUPERFAMILY RING/U-box 88 138 - -
Vvi15g1041 167 FunFam RING-H2 finger protein ATL73 67 139 - -
Vvi15g1041 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 137 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1041 Vvi-Chr15 18703365 18703868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1041 1 153 C3H Transcription Factor Family AT1G63840 56.604 5.79e-58 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1041 K16281 - vvi:100244721 354.755