Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1036 ATGATCTCCAAATGCCGTTTTCTCTCCACTTTCATTGCGAATTTCAAATCTCACTCATCAGCTTCACCAACCCCATCTCCAACTCTCACTGGAGCCACCAAAAATGCTCCAAGCCACGACCCACATCGTCAATCTCACTCATTTCCCTACCTGGGTGGCCTCAGAGCTTCATTGCCGGAAACGGGGTTTACCAACTTGGTCGATTCTTGCTCAACCCATTCTTTCTCATCCCACGCCCTCAAAATCTCCGCCAAATTGGGGTTTCTTCATGGAGGAAAACAACTTCACGCACACGTAATAAAGTTAGGAAACTGTAACTTGCTGTCATTGCAAAATCAAGTTTTGCATGTTTATGTAAAATGTAAGGAATTCAATGATGTATGCAAAATGTTCGATGAAATGCCTCTGAAGAATGTGGTATCCTGGAACACGCTGATTTGTGGGGTAGTCGAGGGTAACTGTAAATTTGCATTGGTTCGTTTAGGGTTTCATTATTTTAGGCAGATGGTCTTGGAAATGATGGCTCCAAATTGCATAACCCTTAATGGTCTACTACGTGCTTCTATTGAGCTGAATGATGTTGGGATATGCAGACAGTTGCATTGTTTTATATTGAAATCAGGGTTTGATTCAAATTGTTTTGTGGGTAGTGCTCTTGTTGATTCATATGCAAAATTTGGTCTAGTTGATGAAGCTCAGTCTGCTTTTGATGAAGTTTCGAGTAGAGATTTGGTTTTGTGGAATGTGATGGTGTCTTGTTATGCTCTGAATGGTGTGCAAGGAAAGGCTTTTGGGGTCTTCAAATTGATGCGGTTGGAGGGTGTCAAGGGGGATAATTTCACCTTCACTAGTATGATCAATTCATGTGGTGTTTTGGGATCTTGTGGATTGGGGAAGCAGGTTCATGGCCTTATTATTAGACTATCTTTTGATTTAGATGTATTGGTAGCTAGTGCTCTTGTTGATATGTACTCAAAGAATGAAAATATAGAAGATGCCCGAAAAGCCTTTGATGGGATGATCGTTAAAAACATTGTGTCATGGACCACCATGATCGTGGGGTATGGACAGCATGGAGATGGGAAGGAGGCTATGAGGCTTCTTCAAGAAATGATTCGAGTATATACTTACCCTGATGAGTTAGCCTTGGCTAGTATCCTTAGCTCATGTGGAAACTTATCAGCAACTAGTGAAGTTGTTCAAGTTCATGCTTATGTTGTAGAAAATGGGTTTGAAGCTTTTTTATCCATTGCAAATGCTCTAGTAAGTGCATATTCCAAGTGTGGCAGCATTGGCAGCGCGTTCCAATCCTTTAGCTCAGTTGCAGAGCCTGATATCATTTCATGGACTTCATTGATGGGTGCTTATGCCTTCCATGGTCTTTCAAAAGAAGGTGTAGAAGTTTTTGAGAAGATGTTATTTAGTAATGTGAGGCCAGATAAAGTTGCCTTTCTTGGAGTCCTTTCTGCCTGTGCCCATGGGGGCTTTGTTCTTGAGGGGCTTCATTACTTCAATCTAATGATCAATGTATATCAAATTATGCCTGATTCAGAGCATTACACTTGCATTATTGATCTTCTTGGGCGTGCTGGTTTTTTGGATGAAGCTATCAATCTTTTGACCTCAATGCCAGTTGAGCCCAGATCGGACACCTTGGGAGCATTCCTTGGGGCATGTAAAGTACACAGAAATGTGGGGTTAGCAAGATGGGCATCAGAAAAGCTTTTTGTAATGGAGCCAAATGAACCTGCGAATTATAGCCTTATGTCTAACATGTACGCTTCCGTTGGGCATTGGTTTGATGTTGCCAGGGTTCGGAAACTGATGAGGGAGAGGTGTGATTTTAAAGTACCAGGTTGTAGCTGGATGGAGATTGCTGGTGAGGTTCATACATTTGTGTCAAGGGATAAGACCCACCCGCGAGCTGTACAGGTTTACGGTATGTTAGATTTGTTGGTTAGGCTCATGGAGGAAGATGATGTTTCTGATATGGAGGTTTTAGGTCTCTCTCTCGCAGAGACAATGAAGAACCCAAATTTGATGTACGGGAACCGGAACCATGGCTCCGGAGCACGAAGAACGCCGGACCGGCTAACGTACTCGCCTAGTACCGTCGACTACGACGCATCCTCCATCCAGAAGTCGCGTAGCGGCCGGAATCCGATGATGATGGCGGTCAAGTCAGTGGCTGGAGTTTTTGTTTCGTGCTTCACTCCGCCGGAAACAACGAGTTCGAAGAACTTTGGAGATTCTGACGAATTTAGAGCTCCTTCGGTTGCATCCGATGTTTCGCGAGCTGGAAGTGTGAGAAGACGTGTCTCAGGCTCAAGTCATGGTATCTATGCCAATTCATACAATTCAACACATGGGAGAGAACCTGGGAGTGTGAAATTCACTTTGGAGGAGATCTACAAGGCAACAAGGAACTTCTCCCCTTCTTGGAAGATTGGACAAGGTGGTTTTGGGACAGTCTACAAGGGCAGACTTGAAGATGGAACCCTTGTTGCTGTCAAACGCGCTAAGAAGAGTCTGTATGATAAACATTTAGGTGTGGAATTTCAGAGTGAGATCCAGACACTGGCACAGGTCGAGCATTTGAATTTGGTGAGGTTTTATGGGTATTTGGAGCATGGAGATGAAAGAATTGTTGTTGTGGAGTATGTCCCCAATGGAACCCTCAGAGAACACTTGGATTGTGTACAAGGCAACATTCTTGATTTTGCTGCACGGCTGGATGTTGCAATTGATGTGGCCCATGCCATCACCTATCTTCACATGTACACAGATCACCCTATCATCCATAGAGACATTAAGTCTTCCAATATTCTTCTCACCGAAAATCTTCGAGCCAAGGTTGCCGACTTTGGTTTTGCTAGATTGGCAGCTGATACCGAATCAGGTGCCACCCATGTATCCACCCAAGTGAAAGGAACGGCTGGCTACCTAGACCCAGAATATCTGAGAACCTATCAACTCACTGAGAAGAGTGATGTCTACTCATTTGGTGTATTACTTGTGGAACTAGTCACAGGTAGGTGCCCCATTGAAGCTAAACGGGAACTCCCGGAGCGAATAACTGCCAAATGGGCCATGAAGAAATTCACCGACGGAGATGCAATTTTTACCTTGGATCCTAGACTGGAAAGGAATGCTGCAAATAACCTAGCACTGGAAAAGATTCTTGAACTAGCATTACAATGTTTGGCTCCACAGAAACAGAACCGACCAAGCATGAGGAGGTGTGCAGAGATCCTTTGGAGTATCCGGAAGGACCACAGGGAGCTATCAGCCTCAGACACTCGGTCACTCTCGTCTCATTCCCAGAAGAGTATTCAACTCAGAGAAGGATAA 3351 0.4423 MISKCRFLSTFIANFKSHSSASPTPSPTLTGATKNAPSHDPHRQSHSFPYLGGLRASLPETGFTNLVDSCSTHSFSSHALKISAKLGFLHGGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSMPVEPRSDTLGAFLGACKVHRNVGLARWASEKLFVMEPNEPANYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCSWMEIAGEVHTFVSRDKTHPRAVQVYGMLDLLVRLMEEDDVSDMEVLGLSLAETMKNPNLMYGNRNHGSGARRTPDRLTYSPSTVDYDASSIQKSRSGRNPMMMAVKSVAGVFVSCFTPPETTSSKNFGDSDEFRAPSVASDVSRAGSVRRRVSGSSHGIYANSYNSTHGREPGSVKFTLEEIYKATRNFSPSWKIGQGGFGTVYKGRLEDGTLVAVKRAKKSLYDKHLGVEFQSEIQTLAQVEHLNLVRFYGYLEHGDERIVVVEYVPNGTLREHLDCVQGNILDFAARLDVAIDVAHAITYLHMYTDHPIIHRDIKSSNILLTENLRAKVADFGFARLAADTESGATHVSTQVKGTAGYLDPEYLRTYQLTEKSDVYSFGVLLVELVTGRCPIEAKRELPERITAKWAMKKFTDGDAIFTLDPRLERNAANNLALEKILELALQCLAPQKQNRPSMRRCAEILWSIRKDHRELSASDTRSLSSHSQKSIQLREG* 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1036 1116 FunFam Pentatricopeptide repeat-containing protein At2g34400 403 653 - -
Vvi15g1036 1116 Pfam Protein kinase domain 815 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g1036 1116 MobiDBLite consensus disorder prediction 18 44 - -
Vvi15g1036 1116 Gene3D Tetratricopeptide repeat domain 294 398 IPR011990 GO:0005515
Vvi15g1036 1116 Gene3D Tetratricopeptide repeat domain 193 293 IPR011990 GO:0005515
Vvi15g1036 1116 Gene3D Tetratricopeptide repeat domain 63 192 IPR011990 GO:0005515
Vvi15g1036 1116 ProSitePatterns Protein kinases ATP-binding region signature. 816 842 IPR017441 GO:0005524
Vvi15g1036 1116 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 888 1099 - -
Vvi15g1036 1116 CDD STKc_IRAK 816 1085 - -
Vvi15g1036 1116 MobiDBLite consensus disorder prediction 680 704 - -
Vvi15g1036 1116 FunFam Pentatricopeptide repeat-containing protein mitochondrial 69 192 - -
Vvi15g1036 1116 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
Vvi15g1036 1116 FunFam Pentatricopeptide repeat-containing protein At5g40410, mitochondrial 301 397 - -
Vvi15g1036 1116 NCBIfam pentatricopeptide repeat 346 373 IPR002885 -
Vvi15g1036 1116 Pfam E motif 562 624 IPR046848 -
Vvi15g1036 1116 MobiDBLite consensus disorder prediction 1097 1116 - -
Vvi15g1036 1116 ProSitePatterns Serine/Threonine protein kinases active-site signature. 932 944 IPR008271 GO:0004672|GO:0006468
Vvi15g1036 1116 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Vvi15g1036 1116 SUPERFAMILY Protein kinase-like (PK-like) 789 1088 IPR011009 -
Vvi15g1036 1116 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 2 767 887 - -
Vvi15g1036 1116 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 162 665 IPR046960 GO:0003723|GO:0009451
Vvi15g1036 1116 FunFam Pentatricopeptide repeat-containing protein At3g58590 196 296 - -
Vvi15g1036 1116 Gene3D Phosphorylase Kinase; domain 1 774 887 - -
Vvi15g1036 1116 ProSiteProfiles Protein kinase domain profile. 810 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g1036 1116 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Vvi15g1036 1116 SMART serkin_6 810 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g1036 1116 Gene3D Tetratricopeptide repeat domain 404 489 IPR011990 GO:0005515
Vvi15g1036 1116 MobiDBLite consensus disorder prediction 18 38 - -
Vvi15g1036 1116 Gene3D Transferase(Phosphotransferase) domain 1 888 1111 - -
Vvi15g1036 1116 Gene3D Tetratricopeptide repeat domain 490 623 IPR011990 GO:0005515
Vvi15g1036 1116 Pfam PPR repeat 112 138 IPR002885 -
Vvi15g1036 1116 Pfam PPR repeat 245 275 IPR002885 -
Vvi15g1036 1116 Pfam PPR repeat 519 543 IPR002885 -
Vvi15g1036 1116 Pfam PPR repeat 447 475 IPR002885 -
Vvi15g1036 1116 Pfam PPR repeat 346 373 IPR002885 -
Vvi15g1036 1116 Pfam PPR repeat 318 345 IPR002885 -
Vvi15g1036 1116 Pfam PPR repeat 217 242 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1036 Vvi-Chr15 18657101 18665435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1036 63 653 Glycoside Hydrolase AT3G49170 33.166 2.48e-104 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vvi15g1036 Pkinase 4.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1036 - - cic:CICLE_v10023685mg 1339.71