Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1035 ATGGGGGGTTGCTGTTGTTCTTCCAGGAAAACTCAATTGCGTGGAACACCTGTATATTATTATTGTCCACCAACCCTACAAGAGCACGAGTTCTTGACATCTCATAATGGTGCAGCCTCTGCATTTGCTGCAGAACTCTTGGTTGATTTGAATCTGCAAACATCAATTCCTGACACTTACCGGCCCCCGCCTGCACCTATTCCATATGATGTGGTTCTCGGACATCCAAGATCAACTGACTGTGACCCTGTCGGAGAAACAATTAATGGTAGTAAAGGTCTCAGAGTGTCAGACTGCAAAACTCAAGCTAGTTCTTTGCCTACTTCACCAAGGAAGTTTGAACTTCCAATATCAAATGAACCTAATTTTTTACCATTGGAAGAAGATGATGCTTGTCCCATTTGTCTTGAAGAGTATGATTTGGAGAACCCAAAAACAATCACAAAATGCAACCATCATTTTCATCTTTCGTGCATTCTTGAGTGGATGGAAAGAAGTGAAACCTGCCCTGTGTGTGATCAGGAAATGATACTTGAAGATACCATGATTATGTAG 555 0.418 MGGCCCSSRKTQLRGTPVYYYCPPTLQEHEFLTSHNGAASAFAAELLVDLNLQTSIPDTYRPPPAPIPYDVVLGHPRSTDCDPVGETINGSKGLRVSDCKTQASSLPTSPRKFELPISNEPNFLPLEEDDACPICLEEYDLENPKTITKCNHHFHLSCILEWMERSETCPVCDQEMILEDTMIM* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1035 184 ProSiteProfiles Zinc finger RING-type profile. 132 173 IPR001841 -
Vvi15g1035 184 SMART FANCL_C_2 128 181 - -
Vvi15g1035 184 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 180 - -
Vvi15g1035 184 FunFam Putative E3 ubiquitin-protein ligase RHB1A 108 177 - -
Vvi15g1035 184 SUPERFAMILY RING/U-box 126 177 - -
Vvi15g1035 184 Pfam Ring finger domain 131 172 IPR001841 -
Vvi15g1035 184 SMART ring_2 132 172 IPR001841 -
Vvi15g1035 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 182 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1035 Vvi-Chr15 18651184 18653860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g1035 1 182 C3H Transcription Factor Family AT4G00335 50.526 8.12e-64 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1035 - - vvi:100256755 396.356