Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g1032 ATGTGTACAAGACCCAGATGGCTAATCGGGTGGTCGATGATTGCTGATGGGTCTGCGTTAGATTGCGTGAAAATCCTCAAGCCTCAGGAGAACGGGTTGTGGTTTGTACTGGAGCCCGGCTCAAAAGGGATTGTAGTAGGAGGGGGCGGGATCAGTGAGCTTCGATGCAGTTTCGATCAATTTTTGGGTCCATTTCTGAAGCAGATCCGTGGGCACAACAGTTATAGGCCTCTGCCTCCAATGCTTGGTAATGGGCAATGTGTGGACTTGTTCAAACTTTTCTTGCTTGTGAAGGAAAAAGGTGGATACCGTACTGTTTCTGAGAATGTGTTGTGGAATTTGGTGGCTGAAGAATCCGGGTTGGATTCTGGTGTTGGCTCAGCTCTGAAATTGGTATACATCAAGTACTTAGATCTATTGGATAGATGGTTGGATAGAATTTTTAAAGACAAGAAATCACACGGTAGTTTGAGTGTTTGTGGTGACACTTCGGGAAGGCTTTTAATGGAGTTAGAGACAGAATTTAAAGGGTTCTTACCGGAAATTTTGGATCAAAAGATGAAAGATGAGGAATACCCACATTTTGATTTGGCAAAGAGTGAGTCAAGTTTTTCGGGTGTGGAAAATTTGTATTGCAATGATGAGGTGAAGAGTGATGTGAAGGTGGAGTCAGAGGGAGGTGTGAAATGTGTTGATGATAATGATGAGGTGAAGAGTTCAGTGAAGCTTGAGTTGGATTTAAACAGAAAATGTGTTGATGACGATGAAGATGTTATGATTTTGGATTTAAATGAAGTTAATGAAGAGGTTTTTACTCGGAAGCGGAAGCGAGAATATATGTTGGGGATGCTGAATTGGGTTACCACAATTGCAAAGAATCCATGTGATCCTTCTATAGGAAAGTTGCCGGAAAGGTCAAAGTGGAAGTTGACTGGGCCAGGGGAATTGTGGAAGCAGGTTTTGTTGGTCCGAGAGGCATTGTTTCTCCAAAGGGATGTTGATTTGAGTGCTGAACAATCAATTTGGCAGAAGAAACAGAAGATGCATCCATCTATGTATGAGGATCATGCTGGATCTGAAAGATTAAGATACAGCCAGAGGCTTCTTTCTGGGAAAAGGTCTAGGTCGCGTGCTTGTTCAGAGTCATCCTCGTCAGCTACTCAAAGTGACTTGGACAAAAGTCCAAGCCCTTGCATGGAAGATCATCATGACAAACAATTGCTTGGAATTTGTGATCCCTCGATTGGACATTCAGTAGCTGGTTTGTGTGGTGATAGTCATGTACGAAAGCGCCCTGTTGGGCCAGCTTTTCAAGCAACAATACCAGAGTGGACAGGGGTGGTGTCTGAAATTGACTCTAAATGGTTGGGTACCCGGGTTTGGCCACTGGACAAAATAGAGCATAAATTTCTAATTGAACGGGATCCTATTGGAAAGGGAAGGCAAGATTCATGTGGCTGCCAATTCCCAGGTTCCATTGCATGTGTCCAATTTCATGTAGCTGAGAAAAGGATCAGAATAAAGCTTGAATTGGGCTCAGCCTTCCAACACTGGCAATTTGATAAGATGGGTGAGGTAGTTGGACTATCTTGGTCAGAGGAAGAAAAGAAGAGGTTCAAGGAAATAGTGAGATTAAATCCTCCATCCATGGGTGTGCGTTTCTGGGATGAGATATTCAAGTCATTTTCTACCAAAAGCAGAGAAGATTTGGTGAGTTACTACTTCAATGTCTTTCTCCTACAGCGCAGAGCTGACCAGAATAGGCTTACTCCAAACAACATTGACAGTGATGACGATGAATCAGAATTTGGACCATTGAGTAATGGGTTTGGGCATGAAGCAATCAATTTACCAAGTTCCATCTTATATGCCCAGAACAATCCACATATGAATTTCAGAGATTGTTGA 1908 0.4292 MCTRPRWLIGWSMIADGSALDCVKILKPQENGLWFVLEPGSKGIVVGGGGISELRCSFDQFLGPFLKQIRGHNSYRPLPPMLGNGQCVDLFKLFLLVKEKGGYRTVSENVLWNLVAEESGLDSGVGSALKLVYIKYLDLLDRWLDRIFKDKKSHGSLSVCGDTSGRLLMELETEFKGFLPEILDQKMKDEEYPHFDLAKSESSFSGVENLYCNDEVKSDVKVESEGGVKCVDDNDEVKSSVKLELDLNRKCVDDDEDVMILDLNEVNEEVFTRKRKREYMLGMLNWVTTIAKNPCDPSIGKLPERSKWKLTGPGELWKQVLLVREALFLQRDVDLSAEQSIWQKKQKMHPSMYEDHAGSERLRYSQRLLSGKRSRSRACSESSSSATQSDLDKSPSPCMEDHHDKQLLGICDPSIGHSVAGLCGDSHVRKRPVGPAFQATIPEWTGVVSEIDSKWLGTRVWPLDKIEHKFLIERDPIGKGRQDSCGCQFPGSIACVQFHVAEKRIRIKLELGSAFQHWQFDKMGEVVGLSWSEEEKKRFKEIVRLNPPSMGVRFWDEIFKSFSTKSREDLVSYYFNVFLLQRRADQNRLTPNNIDSDDDESEFGPLSNGFGHEAINLPSSILYAQNNPHMNFRDC* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g1032 635 Pfam Myb-like DNA-binding domain 530 577 IPR001005 -
Vvi15g1032 635 SMART ELM2_2 431 482 IPR000949 -
Vvi15g1032 635 MobiDBLite consensus disorder prediction 373 400 - -
Vvi15g1032 635 SMART ARID_2 49 141 - -
Vvi15g1032 635 ProSiteProfiles ARID domain profile. 52 145 IPR001606 GO:0003677
Vvi15g1032 635 SMART bright_3 53 146 IPR001606 GO:0003677
Vvi15g1032 635 MobiDBLite consensus disorder prediction 373 394 - -
Vvi15g1032 635 CDD SANT 530 578 IPR001005 -
Vvi15g1032 635 CDD ARID 58 137 - -
Vvi15g1032 635 Gene3D - 51 154 IPR036431 GO:0003677
Vvi15g1032 635 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 53 626 - -
Vvi15g1032 635 SUPERFAMILY ARID-like 57 147 IPR036431 GO:0003677
Vvi15g1032 635 Pfam ARID/BRIGHT DNA binding domain 73 138 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g1032 Vvi-Chr15 18622683 18628205 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vvi15g1032 ARID 1.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g1032 - - vvi:100265458 1271.53