Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0992 ATGGACGGAAAATCAACGGCTTCGACGCCGGTGAAGTACACGGAGCACCGGAGCGTTACGAGTAAGGTGGTGAAGGTTCCGCTTGGGAAGGAGAAGAGGTGCAGCAATGGCGGAACTAGGAGAGTGATTAGGATTTCGGTTACGGATGCTGATGCGACGGACTCTGACGAAGAGGAGGAGGAGTATTGCCGAGTGAGAGTGAAAAAGCATGTAAACGAGATCAGAGTCGTGGAAGCGACGAGAGCGGAGCGGATGAAGTGTCGGGAGGCAGAGAAGGTTTCGAATCGGAGTCAGGTGAGTGGCGGCAAGAAGTTTCGTGGCGTCCGGCAGCGGCCGTGGGGGCGGTGGGCGGCGGAGATCAGAGATCCGTCGCGGCGAGGCAGGTTGTGGCTCGGAACCTACGATACTGCGGAGGAAGCGGCCATGGTTTACGATGATGCCGCGATTCGAATCAGAGGTCCCGATGCTCTCACCAACTTCGCGAAGCCGCCGCCGAAAACCATCCCCCCGGAGATCAACCCCTCAGTTTCCGGCTATGACTCCGGCAGAGACTCCCGGAGTGTTTGCTCTCCTACATCAGTTCTTCGCTTTCAGTCCAGCGAAGAACCTCAGTCGCAGTCGCAATCGCAACCAGAGAGCGACTGGAGACCGCTTTGGGAGGTTAAAGAAGAAGCAACTTTTGCACATGATTTTTGCCTGATAGATTCAAACTCTCACCTGGAGACCGAATGGAGGCCTGTTGAGCAGGTAATGGAAATGTTGAATGAGTGCTTCGTGAACGAGTTTCAAACTCCGGCACCGATATGCTTCGAAGAAATGAACATACCGGACATGATTTTGGCCGAAAGTATCGGCGGCGATATTTCGGTTCGGTTAGACGAGGATATCGGGTCTTGTACCTGGGACGTAGACGCTTACTATGAAGATTCTATTTTACTTCTGTGA 945 0.5386 MDGKSTASTPVKYTEHRSVTSKVVKVPLGKEKRCSNGGTRRVIRISVTDADATDSDEEEEEYCRVRVKKHVNEIRVVEATRAERMKCREAEKVSNRSQVSGGKKFRGVRQRPWGRWAAEIRDPSRRGRLWLGTYDTAEEAAMVYDDAAIRIRGPDALTNFAKPPPKTIPPEINPSVSGYDSGRDSRSVCSPTSVLRFQSSEEPQSQSQSQPESDWRPLWEVKEEATFAHDFCLIDSNSHLETEWRPVEQVMEMLNECFVNEFQTPAPICFEEMNIPDMILAESIGGDISVRLDEDIGSCTWDVDAYYEDSILLL* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0992 314 ProSiteProfiles AP2/ERF domain profile. 104 161 IPR001471 GO:0003700|GO:0006355
Vvi15g0992 314 MobiDBLite consensus disorder prediction 157 216 - -
Vvi15g0992 314 MobiDBLite consensus disorder prediction 178 214 - -
Vvi15g0992 314 SMART rav1_2 104 167 IPR001471 GO:0003700|GO:0006355
Vvi15g0992 314 SUPERFAMILY DNA-binding domain 104 161 IPR016177 GO:0003677
Vvi15g0992 314 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 41 222 - -
Vvi15g0992 314 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Vvi15g0992 314 FunFam Ethylene-responsive transcription factor 2 103 162 - -
Vvi15g0992 314 Gene3D AP2/ERF domain 103 162 IPR036955 GO:0003700|GO:0006355
Vvi15g0992 314 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Vvi15g0992 314 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Vvi15g0992 314 CDD AP2 103 161 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0992 Vvi-Chr15 18381982 18382926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0992 10 203 AP2-EREBP Transcription Factor Family AT4G27950 50.233 2.29e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi15g0992 AP2 3.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0992 - - vvi:100255049 595.504