Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0969 ATGGAAATGGCCAGGGAGTGGGAGCACAACACCCTAATCAATGAGCTAACTCAAGGGAGAGAGATGGCAAACCAGCTCAAAAACCATCTCACTCCATCATCATCCCGCGAAACGCGAGAGTTCTTAGTCGAGAAGATACTTTCTTCCTATGAAAAAGCGCTTTCAATGCTGAAATGTGGTGGTTTTGTGAGCGAATTGCCTCATTCCCTTCCCGGAAGTAGCCCAAGGAGCGAAGGGTCCAACCAAGATTTCAAGGACCAAGCAGGCAAAGATGTCTTCAAGAAGAGAAAAACATTGCCTAGGTGGACCGAGCAAGTGCGCGTCACCATCGGAACAGTGCCAGAAGGCCCTCTTGACGATGGGTACAGCTGGAGAAAATATGGACAGAAAGACATCTTGGGAGCCAATTTTCCAAGGGGATACTTCAGATGTACTCATAGGCATGCGCAGGGCTGTTTGGCAACCAAACAAGTTCAAAGATCAGATGAAGACCCCTCAATCTATGAGGTAACATACCGAGGAAGGCATACTTGTATTCAAGGCTCTCGTGTAGCGCCGGCCTCGGTCGTGCTAGTGGACAAAGAAGAGCCCATTGAGAAGAAAGTCAGTTACGAGCCGGAGCAGCAGCAGCAGCAGCCGCAGGAGGCTGAACAAATAGTGTCGGGCTTTGGGACAGGCCTTAAGGTTAAGACTGAGGACTTGGACAGTAGGGAGAAGATATTCCCATCATTCTCCTTCCCTTTGTCAGATTCGGAAACCGTGGACAAAATTTTTGCTGAATCCATGATTGAAAACAGCTTGATGGGCGGTTTTTCCCCGTCGTTTTTGTCTCCGGCCACATCTGAATCCAACTATTTTCCGGTGTCGCCATGCCAGATGAACAGCTTTGGAATGGGGCACAGTGTGTACACTACAGAATCAGACCTGACGGAGAACATCTCAGCCCCAACTTCAGTCACCAATTCGCCTATTGGGGACTACAGTTTCCCGCTGGATCCTGTGGATTTTGATCCAGATTTTCCATTTGATAATCCTGAATTCTTCCAATGA 1050 0.4848 MEMAREWEHNTLINELTQGREMANQLKNHLTPSSSRETREFLVEKILSSYEKALSMLKCGGFVSELPHSLPGSSPRSEGSNQDFKDQAGKDVFKKRKTLPRWTEQVRVTIGTVPEGPLDDGYSWRKYGQKDILGANFPRGYFRCTHRHAQGCLATKQVQRSDEDPSIYEVTYRGRHTCIQGSRVAPASVVLVDKEEPIEKKVSYEPEQQQQQPQEAEQIVSGFGTGLKVKTEDLDSREKIFPSFSFPLSDSETVDKIFAESMIENSLMGGFSPSFLSPATSESNYFPVSPCQMNSFGMGHSVYTTESDLTENISAPTSVTNSPIGDYSFPLDPVDFDPDFPFDNPEFFQ* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0969 349 SMART WRKY_cls 118 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g0969 349 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 7 271 IPR044810 GO:0003700
Vvi15g0969 349 Pfam WRKY DNA -binding domain 119 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g0969 349 MobiDBLite consensus disorder prediction 68 90 - -
Vvi15g0969 349 Gene3D WRKY domain 103 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi15g0969 349 SUPERFAMILY WRKY DNA-binding domain 115 178 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi15g0969 349 ProSiteProfiles WRKY domain profile. 113 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi15g0969 349 FunFam WRKY transcription factor 53 104 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0969 Vvi-Chr15 18191287 18193249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0969 8 342 WRKY Transcription Factor Family AT2G46400 35.277 6.85e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi15g0969 WRKY 7.2e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0969 - - vvi:100263619 660.218