Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0968 ATGGACAGACGCCGCCGGAAGCAAGCCAAGACCCACAGTTCATGCTGCTCAGAGGAGGTCAGCAGCATTGCATGGGAGTTCATAAACATGACAGAACAAGAGGAAGATCTCATCTATAGAATGTACAAGCTGGTGGGAGACAGGTGGGCTTTGATCGCCGGCCGGATTCCGGGCCGGAAAGCTGAAGAAATCGAGAGGTTTTGGATAATGAGACATGGAGAAGGATTTGCAGGTATAAGAAAAGAGCTCAAGAGATACAAATTCTAA 267 0.4831 MDRRRRKQAKTHSSCCSEEVSSIAWEFINMTEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGEGFAGIRKELKRYKF* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0968 88 FunFam MYB-like transcription factor 29 71 - -
Vvi15g0968 88 Pfam Myb-like DNA-binding domain 30 69 IPR001005 -
Vvi15g0968 88 SMART sant 26 74 IPR001005 -
Vvi15g0968 88 SUPERFAMILY Homeodomain-like 31 69 IPR009057 -
Vvi15g0968 88 Gene3D - 30 72 - -
Vvi15g0968 88 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 29 70 - -
Vvi15g0968 88 ProSiteProfiles Myb-like domain profile. 31 68 IPR001005 -
Vvi15g0968 88 CDD SANT 29 68 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0968 Vvi-Chr15 18177554 18178034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0968 29 68 MYB Transcription Factor Family AT5G14750 57.500 8.16e-14 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi15g0968 Myb_DNA-binding 1.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0968 K09422 - vvi:100258469 185.267