Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi15g0958 | ATGGCAGATTCGGGTGAAATTCAGCCTACTGAACCAGTGGACACAGGAGAAAAGCAGCAGTCCGAGCCAGTATGCAATTTCTTTAGAAAGCCAACAAAAAACAAGAACATTAGGAAAAGGACGCACGACGAAGATGAAAATGAAGACTCAAAAACTGGGACTTCAGTGCTGCATCAGCAGAAGAAGCCTCCCAAACCTGATAATAAGCTGTATTTTTCAACTGGGTCATCTAGAAAATCGACAATGGATGAACCCAACAAAGAATCTGAGCCAATTTTTCAATTTGAGTCTTCAAAGGAGATTCAAGTCCAACATGATAGTAGGGCAACGGCAACTCTTGAGACTGAGACTGATTTTTCAAGAGATGCTCGAGCAATTCGAGAGAGAGTTCTTAAGCAATCACAAGACGCATTAAAGGGGAAAAACAAGAGTGATGAAAAGTTGTATAAAGGGATTCATGGATATACCGATTACAAGGCGGGATTCCGAAGAGAGCAAACAGTTGCCAGTGAGAAAGCTGGTGGGGCACATGGTCCTCTAAGGGCTTCTGCTCACATTAGGGCATCTGCAAGGTTTGATTATCAGCCCGACATTTGTAAGGATTATAAAGAAACGGGGTACTGTGGGTTTGGAGATGCTTGTAAATTTATGCATGACCGGGGGGATTACAAGTCAGGGTGGCAGATGGAGAAAGAGTGGGAAGAAGCAGAGAAAGCAAGGAAGAGAAATTTGGCTATGGGAGGAGATGATGCAGATGAGGGAGGTGGAGGACAGAGCGATGAAGATGACGATGATGCATTGCCATTTGCCTGTTTCATTTGCAGGCAGCCTTTCGTAGATCCTGTTGTAACCAAGTGCAAGCACTTTTTCTGCGAGCATTGTGCTTTAAGGCACCATTCTAAGAACAAGAAGTGCTTTGTCTGCAACCAGCCCACCCTTGGCATGTTCAACACGGCGCATGAGATACGGAAGAAGATGGCTGCAGAGAGAAAATGA | 996 | 0.4468 | MADSGEIQPTEPVDTGEKQQSEPVCNFFRKPTKNKNIRKRTHDEDENEDSKTGTSVLHQQKKPPKPDNKLYFSTGSSRKSTMDEPNKESEPIFQFESSKEIQVQHDSRATATLETETDFSRDARAIRERVLKQSQDALKGKNKSDEKLYKGIHGYTDYKAGFRREQTVASEKAGGAHGPLRASAHIRASARFDYQPDICKDYKETGYCGFGDACKFMHDRGDYKSGWQMEKEWEEAEKARKRNLAMGGDDADEGGGGQSDEDDDDALPFACFICRQPFVDPVVTKCKHFFCEHCALRHHSKNKKCFVCNQPTLGMFNTAHEIRKKMAAERK* | 332 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi15g0958 | 331 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 269 | 328 | IPR013083 | - | |
| Vvi15g0958 | 331 | MobiDBLite | consensus disorder prediction | 1 | 111 | - | - | |
| Vvi15g0958 | 331 | MobiDBLite | consensus disorder prediction | 13 | 27 | - | - | |
| Vvi15g0958 | 331 | SMART | ring_2 | 271 | 308 | IPR001841 | - | |
| Vvi15g0958 | 331 | MobiDBLite | consensus disorder prediction | 95 | 110 | - | - | |
| Vvi15g0958 | 331 | CDD | RING-HC_RNF113A_B | 264 | 317 | - | - | |
| Vvi15g0958 | 331 | Gene3D | - | 191 | 225 | - | - | |
| Vvi15g0958 | 331 | FunFam | RING finger protein 113A | 269 | 328 | - | - | |
| Vvi15g0958 | 331 | Pfam | Zinc finger, C3HC4 type (RING finger) | 270 | 312 | - | - | |
| Vvi15g0958 | 331 | ProSitePatterns | Zinc finger RING-type signature. | 286 | 295 | IPR017907 | - | |
| Vvi15g0958 | 331 | ProSiteProfiles | Zinc finger C3H1-type profile. | 193 | 221 | IPR000571 | GO:0046872 | |
| Vvi15g0958 | 331 | SMART | c3hfinal6 | 193 | 220 | IPR000571 | GO:0046872 | |
| Vvi15g0958 | 331 | MobiDBLite | consensus disorder prediction | 37 | 52 | - | - | |
| Vvi15g0958 | 331 | PANTHER | ZINC FINGER PROTEIN 183 | 19 | 331 | IPR039971 | - | |
| Vvi15g0958 | 331 | SUPERFAMILY | CCCH zinc finger | 192 | 224 | IPR036855 | GO:0046872 | |
| Vvi15g0958 | 331 | ProSiteProfiles | Zinc finger RING-type profile. | 271 | 309 | IPR001841 | - | |
| Vvi15g0958 | 331 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 194 | 219 | IPR000571 | GO:0046872 | |
| Vvi15g0958 | 331 | SUPERFAMILY | RING/U-box | 270 | 313 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi15g0958 | 1 | 330 | C2H2 Transcription Factor Family | AT1G01350 | 69.527 | 2.75e-170 | 475 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Vvi15g0958 | zf-C3HC4_3 | 4.8e-09 | CL0229 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi15g0958 | K13127 | - | vvi:100251778 | 663.685 |