Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0956 ATGCCTGTGAAAATCCTCCCACCATTCCGTTTCCTCAATCCTTGTCTTCCGGTGTCTCGTTTCCAATCCATGAACCTCAAACCCGCCAACCAATATTCTCGGACATTACCCATTTTCGGTCGGGTTTTCCCATTTAAGCTTAAATACCTAGGGCTTGCTCCGCCGCCGAGTCACCATTTCGGTCCCCGGAGGCTCTCGACTCGCTCATCCCGACCAAGACCAAGTTCCACATCCGGATTCAGAGGAGAGGTTAAGGTTTCGAAGAGTCTCATGGAGGACGAGGCTGAACTCAGTGACTGGGTCAGCGGGTTGAAGGATGACTCGTTTCGTACTCGCTTTAACGACGATGACTCGGAGGGAGAGCGCGGTACAGGTAGAAGTGGTAGAGATTCAATGAAGAGGACGAGAGAGATTGAATCTGACGAGTTCGGTGATTTTAACAGGAGAAGAGGTCGGAGCTCAGCTGAGTCATTTTCTAGGAGTTCGAGGAAGAATGGGCCTAACTCGGTTGCCAGAACGCGATATGAGAGTGAATCAGGTATAGAGGATGATGACGACGACGATGAAATGCATTCTCGAAAGCAAATTCGCAGTTTTAGAGGTGGGAATTCGACATTGTCGAAGAGAGGTGGGAGAGATTCGGATTTGGGTTATAGGAGAGATTTTGATTCGGGGTATAGGGGTGACCGAGGAGGTTTTGGGGGTTTGAGGAGAGGTGAAAATGAAAGAGGTGGTGGGGGTTTGAGGAGAGGTGAAAATGAAAGAGGTGGTGGGGGTTTAAGGAGAGGTGCAAATGGAAGAGGTGGTGGGGGTTTAAGGAGAGGTGAAAATGGAAGAGGTGGTGGGGGTTTAAGGAGAGGTGAAAATGGAAGAGGTGGTGGGGGTTTAAGGAGAGGTGACAGAGGGCCCCAAAAACAAGCACATTTGGTCTCGGAAGGTGAGGATGAGGATGAGGATGAGGAATTGAAGGGTAGTTTTAAAGGTTTGCTGAGTGAGGAAGATAGTGAAGAAGAAGAAGAAGAGGATGATGATGATGACGACCATGATGAAGTTTTGAAGAAGAATGCAAGTTCTTTGTTTGGGGCAGCTGCCAAGGAAGCGGTACCTAGGAGTTCGACTGGAAAAAGTGACTCTTACCTAAGTGAGACCAGGTTTGATCAATGTCCAATCTCTCCATTGTCATTAAAAGCAATCAAAGATGCAGGGTATGAGAAGATGACTGTGGTTCAGGAGGCAACCCTTCCTGTCATCCTCAAAGGTAAGGATGTTCTAGCCAAAGCTAAAACAGGCACTGGGAAAACTGTCGCATTTTTGCTTCCATCAATTGAAATTCTTGTAAAATCACCTCCCATTAGCCGCGATCAAAAGCGACCCCCAATTGTTGTGCTAGTAATTTGCCCAACTCGAGAGCTTGCAAGTCAAGCTGCTGCAGAGGCTAATACCCTGTTGAAGTATCATCCCTCGCTTGGTGTTCAAGTTGTGATAGGGGGTACAAGGCTTGCTCTAGAACAGAAACGCATGCAAGCAAATCCATGCCAGATTCTTGTAGCTACCCCTGGACGGCTAAAGGACCATATTGAGAATACAGCAGGATTTGCAACTCGTCTGATGGGTGTCAAAGTCCTTGTACTTGATGAAGCTGACCATTTATTAGACATGGGATTTCGTAAAGACATTGAGAAGATCATTGCTGCTGTTCCAAAACAGCGACAAACACTGCTGTTCTCTGCCACAGTCCCAGAAGAGGTTCGTCAAATCTGTCATATTGCTTTGAAAAGAGATCATGAGTTTATCAATACAGTTCAAGAGGGTAGTGAAGAGACACACTCACAGGTCAGGCAGACCCACATAATTGCTCCACTGGACAAGCATTTTTTACTACTGTATGCTCTTCTAAAAGATCATATTGCAGATGATGTTGACTATAAGGTTCTTGTGTTCTGCACTACTGCAATGGTCACAAGACTTGTTGCTGACCTTCTCGGTGAGCTAAACTTGAATGTTCGAGAAATCCATTCTAGAAAGCCACAGGGTTATAGAACCAGGGTGTCTGATGAATTTCGGAAGTCAAAAGGCCTTATTTTAGTGACTTCTGATGTATCAGCACGTGGAGTTGATTACCCAGATGTTACCCTTGTTATTCAGGTCGGTTTGCCATCTGATAAAGAACAGTATATACATCGACTTGGTAGAACTGGGCGTAAGGGTAAAGAAGGGCAAGGCATATTGTTACTGGCACCTTGGGAGGAATTCTTCTTGTCTACTGCCAAGGATTTGCCGATAACAAAGGCTGAAGCACCTTTAGTTGATCCCGACACAAGGAAAAAGGTGGAGCGGGCACTGTCCCAAGTGGAGATGAAGAGCAAAGAAGCAGCATACCAAGCATGGCTTGGATACTACAATTCGAATAAGAAGGTGGGTCGGGACAAGGTCAGGCTTGTGGAGCTTGCGAATGAGTTCAGCCGAACCATGGGCCTTGACAACCCTCCAGCCATTCCGAAGCTCATTCTCGGCAAGATGGGTCTCAGGAATGTCCCTGGGTTGCGCTCCAAATAG 2556 0.4679 MPVKILPPFRFLNPCLPVSRFQSMNLKPANQYSRTLPIFGRVFPFKLKYLGLAPPPSHHFGPRRLSTRSSRPRPSSTSGFRGEVKVSKSLMEDEAELSDWVSGLKDDSFRTRFNDDDSEGERGTGRSGRDSMKRTREIESDEFGDFNRRRGRSSAESFSRSSRKNGPNSVARTRYESESGIEDDDDDDEMHSRKQIRSFRGGNSTLSKRGGRDSDLGYRRDFDSGYRGDRGGFGGLRRGENERGGGGLRRGENERGGGGLRRGANGRGGGGLRRGENGRGGGGLRRGENGRGGGGLRRGDRGPQKQAHLVSEGEDEDEDEELKGSFKGLLSEEDSEEEEEEDDDDDDHDEVLKKNASSLFGAAAKEAVPRSSTGKSDSYLSETRFDQCPISPLSLKAIKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEILVKSPPISRDQKRPPIVVLVICPTRELASQAAAEANTLLKYHPSLGVQVVIGGTRLALEQKRMQANPCQILVATPGRLKDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVQEGSEETHSQVRQTHIIAPLDKHFLLLYALLKDHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQGYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPSDKEQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTAKDLPITKAEAPLVDPDTRKKVERALSQVEMKSKEAAYQAWLGYYNSNKKVGRDKVRLVELANEFSRTMGLDNPPAIPKLILGKMGLRNVPGLRSK* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0956 851 SMART ultradead3 402 615 IPR014001 -
Vvi15g0956 851 MobiDBLite consensus disorder prediction 58 87 - -
Vvi15g0956 851 SMART helicmild6 655 736 IPR001650 -
Vvi15g0956 851 MobiDBLite consensus disorder prediction 68 83 - -
Vvi15g0956 851 MobiDBLite consensus disorder prediction 212 257 - -
Vvi15g0956 851 MobiDBLite consensus disorder prediction 158 175 - -
Vvi15g0956 851 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 383 411 IPR014014 GO:0003724
Vvi15g0956 851 MobiDBLite consensus disorder prediction 332 348 - -
Vvi15g0956 851 CDD DEADc_MSS116 390 599 - -
Vvi15g0956 851 Gene3D - 330 598 IPR027417 -
Vvi15g0956 851 Pfam DEAD/DEAH box helicase 408 585 IPR011545 GO:0003676|GO:0005524
Vvi15g0956 851 Gene3D - 606 829 IPR027417 -
Vvi15g0956 851 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 414 597 IPR014001 -
Vvi15g0956 851 CDD SF2_C_DEAD 612 745 - -
Vvi15g0956 851 MobiDBLite consensus disorder prediction 111 157 - -
Vvi15g0956 851 MobiDBLite consensus disorder prediction 111 349 - -
Vvi15g0956 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 751 IPR027417 -
Vvi15g0956 851 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 631 782 IPR001650 -
Vvi15g0956 851 Pfam Helicase conserved C-terminal domain 627 736 IPR001650 -
Vvi15g0956 851 PANTHER RNA HELICASE 343 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0956 Vvi-Chr15 18075965 18081116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0956 383 765 Eukaryotic Initiation Factors Gene Family AT3G19760 27.621 3.50e-43 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0956 - - vvi:100258444 1054.28