Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0955 ATGGGGTTTGTACACCTACCATCACAAACTCTGGACATGGACAGGGAACCCATCCCAAAAACAAAGTTTGATGAGAGGGAGGATGTGATTTGGGATTCATACAACTCTTGGATTATGGAGCACCCTTCTGCATTGGATGAATTTGAGCAGATAATGAGTGCAATACAGCATAAGAAAATTGTTGTGTTTCTTGATTATGATGGGACTCTCTCAGACATTGTAGACGATCCCGACAAGGCTTTCATGACTGAAACGATGCGATCAGCGGTTCGTGAAGTGGCTGAATGTTACCCTACCGCCATCATCAGTGGAAGGCGTCGGGAGAAGGTTCAGGACTTTGTCAAATTGGACGATATTTACTATGCAGGAAGCCATGGAATGGACATCATCTCTCCGGTATGCTCGAATAGGTTTGGAGGTCAAGAACACCATCGCAGGGTTGTCGATGAAAAGGGTAATGAGATTGTCCTCTTCCAACCTGCTGCAGACTTCTTACCTAAAGTTGAAGGGATTTTCAGGCTGCTGACTACACGAACCAAGAACATAAAAGGCTCGAGGGTTGAGGACAACAAGTTCTGCGTGTCGGTTCATTTCCGATGCGTCCATGAAAAGGACACCAACGCCCTTAAAGAAGTGGTAGAATCTGTGCTGGAAGATTATCCAGATTTTCGGGTTACTAGGGGGAAAAAGGTCCTTGAGGTTCGCCCTCTTATAGAATGGGACAAGGGTCATGCCCTTGAGTATCTTCTCGATACGCTTGGTTTTGATAGCTCAGATGTTGTCCCTATATACTTAGGCGATGACCGTACTGATGAAGATGCATTTAAGATGATAACAACTCGAGGAGAGGGGTACCCGATAATTGTTTCGTCCATCCCCAAAGAGACAAAGGCTTCCTACTCTCTGCGCGACACCAAGGAGGTGATGCAGTTCCTTCAAAATCTTGCAAGGTGGAGCACCAACTCTTCGCTGGGAAATTCATGA 984 0.4593 MGFVHLPSQTLDMDREPIPKTKFDEREDVIWDSYNSWIMEHPSALDEFEQIMSAIQHKKIVVFLDYDGTLSDIVDDPDKAFMTETMRSAVREVAECYPTAIISGRRREKVQDFVKLDDIYYAGSHGMDIISPVCSNRFGGQEHHRRVVDEKGNEIVLFQPAADFLPKVEGIFRLLTTRTKNIKGSRVEDNKFCVSVHFRCVHEKDTNALKEVVESVLEDYPDFRVTRGKKVLEVRPLIEWDKGHALEYLLDTLGFDSSDVVPIYLGDDRTDEDAFKMITTRGEGYPIIVSSIPKETKASYSLRDTKEVMQFLQNLARWSTNSSLGNS* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0955 327 Gene3D - 175 326 IPR023214 -
Vvi15g0955 327 Gene3D - 60 145 IPR023214 -
Vvi15g0955 327 Pfam Trehalose-phosphatase 63 305 IPR003337 GO:0003824|GO:0005992
Vvi15g0955 327 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 26 323 IPR044651 GO:0004805|GO:0005992
Vvi15g0955 327 SUPERFAMILY HAD-like 61 317 IPR036412 -
Vvi15g0955 327 FunFam Trehalose 6-phosphate phosphatase 201 326 - -
Vvi15g0955 327 FunFam Trehalose 6-phosphate phosphatase 60 146 - -
Vvi15g0955 327 NCBIfam HAD-IIB family hydrolase 62 281 IPR006379 -
Vvi15g0955 327 NCBIfam trehalose-phosphatase 58 316 IPR003337 GO:0003824|GO:0005992
Vvi15g0955 327 CDD HAD_TPP 61 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0955 Vvi-Chr15 18070915 18073084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0955 58 322 Trehalose Biosynthesis Gene Families AT1G23870 27.018 3.54e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0955 K01087 - vvi:100248172 664.455