Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0953 ATGCCAAGAAAGAAGAAGAGGGTCCTACAAAGAAAGTCCTATCGAATAGGACCGGGATGCCCACTCTACAATTCATACAATTTCTTGGAGCCTCACCACTCATTCACTCTTTTCTCTTTAAACGACGTCGAACAACTGCCACTGGAGGCTCTCCACGAAGTTTCTCCGTGTAGTCGCATTTGTATGACCTTCCATGGAAGATCACCATGCACTGGAACTAAGCTGGAGAAAGCGGAGGTTCTGCTAGAGGGCGTAGTTAAGGTGGGGTTTTGGTTTTCTGGATACCCTTTACGCGCAAGAGACATGTTTCAGGAATGGAGTCCAGCAAGATCCGTGAGTTCTGAGGGGCAATTCCCCCCATACCGGAGAGGAACTAGAGCAACTATAAGTGGAATTCTTGAGAGGATTCAGGAAGGATTTGCAACAGTTTCGGAAAGGATTCAGAGCTGGAGAAAATCACTAAGCCTCCCTTCAAGAACCAGAAAGCCATCAAAAGAATTGAAGAGTCCCAGGAAGAAAATTCTTGACCCCCAGGGTTCGTTTCTTCAGGAGTGGAATAAAGTATTCCTCATCTCTACTGTACTTGCAGTTGCCTTGGATCCATTTTTCTTTTACATCCCAATTCTTCATCGCGAGGAGACCTGCCTTGATTTGGACACGAAACTGGGGGTCATTGCTTGTGTTCTTCGTTCAATTGTGGACATCTTTTACATTCTTCATATTATCTTTCAGTTCCATACTGGGTTTATCGCCCCTTCTTCTAGAGTGTTTGGGAGGGGTGAATTAGTTGAAGCCCCTTCAGCTATAGCGAAAAGATACTTGTCCACCTACTTCATTATCGATATTCTCTCAATCCTTCCCCTCCCACAGTTGGTTATTCTGATCGTCAAAGCTGAAGTGAAAGGACCGGTTTCATTGAATACAAAGGACTTGTTGAAGTCTGTCATTTTCTCCCAGTATGTGCCGAGACTACTCCGGATTTATCCACTATATAAAGAAGTGACGACAACTTCTGGCATTATTACTCAAACCGCATGGGCTGGGGCTGTTTTCAATCTCTGCCTCTATATGCTGGCCAGTCATGTAGTTGGAGCTTTTTGGTACTTGTTTGCAATAGAACGACAAAATACCTGCTGGGTAAAGGGAAGTCGGTCATGTGGTTTCAATCCTGTAGGTTTGTACTGTGGAGCAGAAAGTAGACGAAATAATATTACTCCACAGGTTCATGATTGTCTAAATGCAGCTTGTCCTCTTATCGACCCTGATGATATTGTGAATACAACAACGTTTAACTTTGGAATATTCTTTGATGCTCTTCAATCTCATGTGGTGGAAAGAAAAGATTTCCAAAATAAATTCTTTTACTGCTTTTGGTGGGGTCTGAGAAATCTTAGTTCTCTGGGACAGAACCTCAAAACAAGCACTTTCATCGAGGAGATCTTCTTTGCTGTGTTTATCTCCATCTTTGGATTGGTTTTATTTTCACTACTCATTGGAAATATGCAGAAATATCTGCAATCCACAACTGTTAGAATCGAAGAGATGAGAGTAAAAAGGCAGGATGCAGAGCAGTGGATGGCTCATCGATTGCTCCCTGACCCCCTGAGGGTGCGGATTAGGCGGTATGAACAATACAAATGGCAAGAAACCAGAGGTGTCCAGGAGCATAAACTTATTTCAGATCTTCCCAAGGACCTCAGGAGAGACGTAAGGCGCCATCTCTGCTGGAATCTGCTAATGAGAGTGCCAATGTTCGAAAAAATGGACAGCCAACTGTTGGATGCACTGTGTGATCACCTAAAGCCAGTTCTTTATACAGAAAACAGCACCATTCTCCGTGAGGGGGATCCTGTTGATGAGATCTTCTTCATCATGCGAGGCAAGCTGTCGACTATAACCACCAATGGTGGAAGAACTGGCTTCTTCAATGAAACTTATCTCAAGGCTGGTGACTTCTGTGGAGATGAGCTTCTCACATGGGCCTTGGAGTCCAAATCCTCTTCCAATCTCCCCATCTCAACCAGAACTGTAAAGGCCATAACTGAGGTTGAAGCCTTTGGTCTAATGTCCAATGACCTGATAACCGTTGCCTCCCAGTTCTTCTACCGTCTCCACAGCAAGCAGCTCCAGTATACTTTCAGGTTCTACTCCCAGCAGTGGAGGACATGGGGAGCCTGCTTTATACAAGCTGCTTGGCAGCGTTACAGGAGGAGGAAGCAGGACAAGGCTTTACAGGAGGCGGAAGAGAGGCTGCAAGATGCTTTATCAAGAGAGGTAGGTGCCTCTCCAAGCCTCGGTGCCACTGTCTTTGCATCAAGGTTTGCTGCCAAACTTCTACGAGCCCTGCGGCGTAACGGTGGACGCAGAACCCGATTGCCACAGAGACTACCACCTTTGATGCCTCAGAAGCCCACTGATCCTGATTTTACTTCGGCAGAGATGAATTTCAAGCTGGTTAATCCATGGTCCAGGAAGACAATTCTTGATCCAGAGGGATCATTTCTTCAGACATGGAATAAAATATTTCTAGTCTCTTGTGTGCTTGCAATTTCCCTCGATGCATTTTTCTTTTATGCCCCTGTTATTAATCGTCATAGTACATGCCTAGATTTGGATGACCGATTGCAGATTGTTGCTTGTGTTCTTCGTACACTCATCGATGTCTTCTACATCCTTCATATTATCTTTCAGTTCCGCACTGGTTTTGTTGCCCCTTCTTCTCGAGTATTTGGAGATGGTGTATTAATTGATGATTCTTCAGTTATAGCGAAAAGATACTTGCCCTACTTCGTCATCGACATTCTATCAATTTTACCCCTCCCACAGGTAGCAGTTTTTATTGTCAACCCACAATTGAAAAGTCCAGTTTCATTCATTAGGAAGGACTTCTTGAAGTTTGTTATTCTCTCCCAATTAGTGCCAAGACTTGTGCGGATCTACCCACTATATAAAGAAGTAACTACAACTTCTGGCATACTTATTGAAACGGCATGGGCTGGTGCTGCTATCAATCTCTTCTTCTATATGCTAGCCAGTCATGTGGTTGGAGCCTTTTGGTACTTGCTGTCTATAGAGAGGCAAGATCAGTGTTGGCGTAATTGGTGTGGGGCACATAATGTGAGTTGTTCATATTTATATTGTGGAGGAGACCGAATACACAATGACCTTGCTGAGCGATATGCATTACTAAATGCTTCTTGCCCTCTTAGTGAACCAGATGGAATTGAAAATTCCACAGTTTTTAACTTTGGAATATTCATTAAGGCTCTTCAGTCTCGGGTTGTGGAAACAAGAGATTTTCCATATAAGTTTTCTTATTGCTTTTGGTGGGGTCTGCGAAATATTAGTTCTCTGGGTTCAAACCTTGATACAAGCCCTTTCATTGGAGAGGTTCTGTTTGCTGTCTTTATTTCCATATTTGGATTGATATTATTTTCATTACTTGTTGGCAATATGCAGAAATATCTGCAAAATCTGCAATCCATAGCTGCTAGAATTGAAGAGGAAAGAGAGAAAAGGAAAAACACTGAGCTGTGGATGTCCCACCGCATCCTTCCTGAGCACCTGAGGATTCGGATTAGGCAGTATAGACAGTACAAATGGAAAAAAACCAAGGGTGTTGACGAAAATGGGCTTATCAATGACCTTCCGAAGGACCTCCGAAGAGACATAAAGCGGCATCTCCGTTTGGCTCTACTTATGAGAATGCCAGTGTTTGAAAGATTTGATGAGCTACTGTTGGATGCAATTTGTGATCGCCTCAAGCCAGTTCTTTATACAGAAGGTAGCTACATTGTCCGTGAGGGGGATCCAATTGATGAAATGCTCTTTATCGTGCGAGGCAAACTAAGAAGCATAAGCACAGATGGTGGAAGAACTGGCTTCCTCAACTTAATTTATCTTGAGGCTGGTGATTTCTATGGAGAAGAGCTTCTTCCATGGGCCTTGGAGTCCCAGTCCTCTCCATTTCACCCCATCTCAACCAGAACCATAAGTGCCGTAACAGAGGTTGAAGCCTCTGCTCTAACGGCTCATGACTTGAAGTCTCTGATCTCCTATCACTTCTCGCATCCTCTTCCCAGAAAGCAGCTTGTGCAGAGTCTCAGGTTGTGGTCACAGAAGTGGAGGACATGGGCTGCCTGTTTTATACAAGTAGCTTGGTGGCGTTACCAGAAGAGGAAGCAAAATAAGGCCTTACAGGAGGCAGAAGACAGGTTGCGAGATGCTTTGTCGAAAGCAGTAGGCACCTCTACAACCTTGGGCGCCACTAATTATGCATCGAGGTTTGCTGCCAATATGTTACGAATCTTGAGGCGCAATGGTGGTAGCAGAGCCAGATTGCCACAAAGATCATGGTTCGCGCTGCCTCCTAAGCCACGTGATCCCCAGCTTACCATCTGA 4401 0.4435 MPRKKKRVLQRKSYRIGPGCPLYNSYNFLEPHHSFTLFSLNDVEQLPLEALHEVSPCSRICMTFHGRSPCTGTKLEKAEVLLEGVVKVGFWFSGYPLRARDMFQEWSPARSVSSEGQFPPYRRGTRATISGILERIQEGFATVSERIQSWRKSLSLPSRTRKPSKELKSPRKKILDPQGSFLQEWNKVFLISTVLAVALDPFFFYIPILHREETCLDLDTKLGVIACVLRSIVDIFYILHIIFQFHTGFIAPSSRVFGRGELVEAPSAIAKRYLSTYFIIDILSILPLPQLVILIVKAEVKGPVSLNTKDLLKSVIFSQYVPRLLRIYPLYKEVTTTSGIITQTAWAGAVFNLCLYMLASHVVGAFWYLFAIERQNTCWVKGSRSCGFNPVGLYCGAESRRNNITPQVHDCLNAACPLIDPDDIVNTTTFNFGIFFDALQSHVVERKDFQNKFFYCFWWGLRNLSSLGQNLKTSTFIEEIFFAVFISIFGLVLFSLLIGNMQKYLQSTTVRIEEMRVKRQDAEQWMAHRLLPDPLRVRIRRYEQYKWQETRGVQEHKLISDLPKDLRRDVRRHLCWNLLMRVPMFEKMDSQLLDALCDHLKPVLYTENSTILREGDPVDEIFFIMRGKLSTITTNGGRTGFFNETYLKAGDFCGDELLTWALESKSSSNLPISTRTVKAITEVEAFGLMSNDLITVASQFFYRLHSKQLQYTFRFYSQQWRTWGACFIQAAWQRYRRRKQDKALQEAEERLQDALSREVGASPSLGATVFASRFAAKLLRALRRNGGRRTRLPQRLPPLMPQKPTDPDFTSAEMNFKLVNPWSRKTILDPEGSFLQTWNKIFLVSCVLAISLDAFFFYAPVINRHSTCLDLDDRLQIVACVLRTLIDVFYILHIIFQFRTGFVAPSSRVFGDGVLIDDSSVIAKRYLPYFVIDILSILPLPQVAVFIVNPQLKSPVSFIRKDFLKFVILSQLVPRLVRIYPLYKEVTTTSGILIETAWAGAAINLFFYMLASHVVGAFWYLLSIERQDQCWRNWCGAHNVSCSYLYCGGDRIHNDLAERYALLNASCPLSEPDGIENSTVFNFGIFIKALQSRVVETRDFPYKFSYCFWWGLRNISSLGSNLDTSPFIGEVLFAVFISIFGLILFSLLVGNMQKYLQNLQSIAARIEEEREKRKNTELWMSHRILPEHLRIRIRQYRQYKWKKTKGVDENGLINDLPKDLRRDIKRHLRLALLMRMPVFERFDELLLDAICDRLKPVLYTEGSYIVREGDPIDEMLFIVRGKLRSISTDGGRTGFLNLIYLEAGDFYGEELLPWALESQSSPFHPISTRTISAVTEVEASALTAHDLKSLISYHFSHPLPRKQLVQSLRLWSQKWRTWAACFIQVAWWRYQKRKQNKALQEAEDRLRDALSKAVGTSTTLGATNYASRFAANMLRILRRNGGSRARLPQRSWFALPPKPRDPQLTI* 1467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0953 1466 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 144 809 - -
Vvi15g0953 1466 Coils Coil 1392 1412 - -
Vvi15g0953 1466 SUPERFAMILY cAMP-binding domain-like 514 700 IPR018490 -
Vvi15g0953 1466 Coils Coil 737 757 - -
Vvi15g0953 1466 SMART cnmp_10 1238 1369 IPR000595 -
Vvi15g0953 1466 SMART cnmp_10 584 715 IPR000595 -
Vvi15g0953 1466 CDD CAP_ED 1238 1351 IPR000595 -
Vvi15g0953 1466 Pfam Cyclic nucleotide-binding domain 1258 1352 IPR000595 -
Vvi15g0953 1466 Pfam Cyclic nucleotide-binding domain 604 695 IPR000595 -
Vvi15g0953 1466 Coils Coil 1152 1176 - -
Vvi15g0953 1466 Gene3D Jelly Rolls 582 701 IPR014710 -
Vvi15g0953 1466 Gene3D Jelly Rolls 1236 1354 IPR014710 -
Vvi15g0953 1466 CDD CAP_ED 584 716 IPR000595 -
Vvi15g0953 1466 Gene3D - 842 1160 - -
Vvi15g0953 1466 ProSiteProfiles cAMP/cGMP binding motif profile. 1238 1351 IPR000595 -
Vvi15g0953 1466 SUPERFAMILY cAMP-binding domain-like 1168 1354 IPR018490 -
Vvi15g0953 1466 Gene3D Helix hairpin bin 511 575 - -
Vvi15g0953 1466 Gene3D Helix hairpin bin 1166 1228 - -
Vvi15g0953 1466 FunFam Cyclic nucleotide-gated ion channel 1 582 700 - -
Vvi15g0953 1466 Pfam Ion transport protein 185 511 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi15g0953 1466 Pfam Ion transport protein 836 1161 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi15g0953 1466 SUPERFAMILY Voltage-gated potassium channels 176 506 - -
Vvi15g0953 1466 FunFam Cyclic nucleotide-gated ion channel 1 511 575 - -
Vvi15g0953 1466 ProSiteProfiles cAMP/cGMP binding motif profile. 584 668 IPR000595 -
Vvi15g0953 1466 Gene3D - 202 508 - -
Vvi15g0953 1466 SUPERFAMILY Voltage-gated potassium channels 830 1160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0953 Vvi-Chr15 18026234 18036390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0953 103 813 Ion Channels AT5G53130 63.398 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0953 K05391 - vvi:100260148 1389.02