Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0949 ATGGAGATCTACCACCTCTTCGCCAAACTCCTGGATGGAAAAACTCTAACCATCCGGCTTACATCACCCACAATCTCCGGCGACGTCATTAAGGGCCATCTCCACCGTATCACATCGATCCCTGTCCACCTCCAGCGTTTGGTTTCGCAATCGCGTCAAATCTCCGACGAAACCCTAATTTCCGCCGATAAGGGAAGCGGTATCTTCCCGACGGTGCACCTTCTTCTGCCTCTTCCCGGCGGCAAGGGTGGTTTCGGTTCGCTCCTCCGTGGGGCGGCGACGAAGGCGGGGCAGAAGAAGACGAATAATTTTGATGCGTGTAGGGATATGAGTGGGCGGAGGCTGAGGCATGTCAATGCTGAGAAGAAGTTGGAGGAGTGGAGGGCGGAGGCGGCGGAAAGAGAGCTAGAGAGGATGGCGGAGGATTACATAAAGAAGGCGGCGAAGAAGGGGAAAAGTGGTAATGGAAGTGCGGCGGCTGTGGCGGCGGAGAAGTATGTGGAGAAGTATCGGGAGGAATCGGCGAAGTGTGTGGCGGAGGTGGAGGCATCGGTGAGGGAGGCGATGGGCGGATTTGGGAAGCGGAAGGGCGGGGAGGTGGCGACCTCAGCTTCTGATGCAAAAAGATTGAAGATTTGGATGGGAAAGAAAAAATTAGAGGAAAGTGACAGCGATGAAGATGATGCAGAAAACGAGAGGTCTATTGTTTTGGATAATGGGAGTGATTCAGATTCAAACAAGGAAACTGATGGGAGTTTTGATTCAGTATCTGGTGGAAAATTGAATGGAGATTGTTCTGGAGGGTCATGTGAGAGTGGTTCAGAAGAAGAAAAAGAAGCTTTTGGGCAAGTTAAACCAGAGGTCCAGGAAGAAAAAGTAGTTCAGGCTACAAGTGTCTCTTGTTTGGATGCGGTGGGAAGTGAAGCAGTTGAGCCTGAAAAGGGAGATTCTGATGAACCCAAATCTGGAAATGTGGAAGTTATCGGTCTACCCCAAAGCAATTCGGGTTCAGAGAATGGCAGTGACATAGAAAAGGTAGCAATTGATTCTGAAGACAATGGTGTTTCTGAATCTAAACCAGGTGTTCATGAAGGAGAAGAAAGTGTGGCAAACACAGACACCTTGGATGCAGGAAAGCCTCTGAACTTTGATGACTTCAGTTCAGCTGCAGAGATGGAGGTTCTTGGACTGGAAAGGTTAAAATCTGAACTGCAAGAACGTGGGTTGAAATGTGGAGGTACATTGCAAGAGCGGGCTGCCAGGCTTTTCCTGCTCAAGACTATACCTTTGGAGAAGCTACCAAAGAAGCTGCTCGCCAAGAAATGA 1326 0.497 MEIYHLFAKLLDGKTLTIRLTSPTISGDVIKGHLHRITSIPVHLQRLVSQSRQISDETLISADKGSGIFPTVHLLLPLPGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKKLEEWRAEAAERELERMAEDYIKKAAKKGKSGNGSAAAVAAEKYVEKYREESAKCVAEVEASVREAMGGFGKRKGGEVATSASDAKRLKIWMGKKKLEESDSDEDDAENERSIVLDNGSDSDSNKETDGSFDSVSGGKLNGDCSGGSCESGSEEEKEAFGQVKPEVQEEKVVQATSVSCLDAVGSEAVEPEKGDSDEPKSGNVEVIGLPQSNSGSENGSDIEKVAIDSEDNGVSESKPGVHEGEESVANTDTLDAGKPLNFDDFSSAAEMEVLGLERLKSELQERGLKCGGTLQERAARLFLLKTIPLEKLPKKLLAKK* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0949 441 MobiDBLite consensus disorder prediction 327 341 - -
Vvi15g0949 441 MobiDBLite consensus disorder prediction 304 380 - -
Vvi15g0949 441 Coils Coil 115 149 - -
Vvi15g0949 441 MobiDBLite consensus disorder prediction 218 289 - -
Vvi15g0949 441 Gene3D - 2 83 - -
Vvi15g0949 441 MobiDBLite consensus disorder prediction 271 286 - -
Vvi15g0949 441 MobiDBLite consensus disorder prediction 233 249 - -
Vvi15g0949 441 PANTHER SPLICING FACTOR SF3A-RELATED 5 440 - -
Vvi15g0949 441 Pfam Replication stress response SDE2 C-terminal 370 440 IPR025086 -
Vvi15g0949 441 MobiDBLite consensus disorder prediction 344 370 - -
Vvi15g0949 441 Pfam Silencing defective 2 N-terminal ubiquitin domain 8 152 IPR024974 -
Vvi15g0949 441 SUPERFAMILY Ubiquitin-like 4 62 IPR029071 -
Vvi15g0949 441 CDD Ubl_ubiquitin_like 6 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0949 Vvi-Chr15 17990516 17992831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0949 381 440 C2H2 Transcription Factor Family AT5G06160 50.000 5.74e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0949 K25059 - vvi:100255081 719.539