Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0948 ATGGCTTTCTTGGACATCTTCTTCTTTCTCTTCTCTGTCTTTCCCCTGATTCTTGCAAGAGAGGCTTGCCCAGTTTCCAGGTGTGGCAGCAATGGCTCCACAATTGGATTCCCTTTCCACCTAGTAGGCCAGCAACACCAAAACTGTGGTTATCCCGGGTTCAATCTAAGCTGCGGGAGTCCAGGTATAACAGTTCTGAGACTTCCTTATTGGGGAGAATTCTTCGTTCGCGGTATCAATTATATCACACAAGAGATACAACTCTATGACCCGGACAATTGCCTTCCTAAACGACTTCTGGCCTTCGATATTACGGGTTCTCCTTTCATGGCTGAGTACTACCTGAACTACACCTTCCTCATCTGCCCCTCTGAGCTCACAAGGTTTCGGTTCACCGCCATTGACTGTCTCAGCAATTCCACATCCTCGGTCTTAGCTACTTCTTCCATGAGTCTTGTTAGTAAAATGTCCTCATGCCAGATACTCACTACTCTAGCAGTTCCAGTTTCGTGGCCTGTTCAGAATGAGGAAGACTTCTCATCAGACCTCAACTCAGATCTTCAGTTAACATGGGATGTGCCCAGTTGCGGAGACTGCCAAGCTCAAGGCGGTTCATGCGGGTTCCAGAACAGCTCCAGTCTAGAAGTCGGATGTTTCTCTACGCCCGGAACAGACAATGGAAGCGAATCCAGTGGTAGTCTCCGAGTCTTTAGGATCATTTCCTTGTCCATTACCTTACCAGCCATCATATGTGCTGTTGGGATCGCATTCTTCATATGCTTCAGTGACAGGAGGCGCGACCACAGCCGGGTAAACGCTGCACAGCAGAGCGCTGCTTCTCTTGAAGCGCCACAGGAGCCTGCTGCCATGATGGGCCTAGATGAGTCCACCATTGAGTCCTACACAAAAGTGGTTCTTGGAGAAAGCCGACGCGTTCCTGGACTTAATGACAGCACTTGCCCTATATGCTTATCGGACTACTGCACCAAGGAGACACTGAGGTGCATACCTGACTGCGGACATTGCTTCCATGCTGAGTGCATTGATGAGTGGCTCCGGGTGAATGGAAGCTGCCCAGTTTGCCGGAATTCTCCATCTCCTGTCTATGTGAATCCATAG 1119 0.496 MAFLDIFFFLFSVFPLILAREACPVSRCGSNGSTIGFPFHLVGQQHQNCGYPGFNLSCGSPGITVLRLPYWGEFFVRGINYITQEIQLYDPDNCLPKRLLAFDITGSPFMAEYYLNYTFLICPSELTRFRFTAIDCLSNSTSSVLATSSMSLVSKMSSCQILTTLAVPVSWPVQNEEDFSSDLNSDLQLTWDVPSCGDCQAQGGSCGFQNSSSLEVGCFSTPGTDNGSESSGSLRVFRIISLSITLPAIICAVGIAFFICFSDRRRDHSRVNAAQQSAASLEAPQEPAAMMGLDESTIESYTKVVLGESRRVPGLNDSTCPICLSDYCTKETLRCIPDCGHCFHAECIDEWLRVNGSCPVCRNSPSPVYVNP* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0948 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 367 IPR013083 -
Vvi15g0948 372 SMART ring_2 320 361 IPR001841 -
Vvi15g0948 372 SUPERFAMILY RING/U-box 313 365 - -
Vvi15g0948 372 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 366 IPR046948 -
Vvi15g0948 372 ProSiteProfiles Zinc finger RING-type profile. 320 362 IPR001841 -
Vvi15g0948 372 Pfam Wall-associated receptor kinase galacturonan-binding 23 90 IPR025287 GO:0030247
Vvi15g0948 372 Pfam Wall-associated receptor kinase C-terminal 141 220 IPR032872 -
Vvi15g0948 372 CDD RING-H2_EL5-like 320 362 - -
Vvi15g0948 372 Pfam Ring finger domain 319 362 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0948 Vvi-Chr15 17988199 17990082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0948 21 368 C3H Transcription Factor Family AT2G46495 47.309 8.67e-101 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0948 - - vvi:100241420 748.429